r4ss/r4ss

Issues

• failed to load using pak

  #840 opened 2 months ago by Rick-Methot-NOAA
  8

• [Feature]/[BUG]: SS3 expanded output for SPAWN_RECR output table (SS3 added a,b formulation)

  #941 opened 4 months ago by e-perl-NOAA
  11

• [Feature]: add figures to illustrate time-varying stock-recruit quantities (when present)

  #944 opened 3 months ago by iantaylor-NOAA
  1

• [Feature]: add 4-panel catch and time series summary plot

  #943 opened 3 months ago by iantaylor-NOAA
  0

• [Bug]: Re-run simple small file with v.3.30.22 exe

  #893 opened 4 months ago by e-perl-NOAA
  1

• get_ss3_exe() function failing for some users due to SSL error unrelated to r4ss

  #927 opened 6 months ago by iantaylor-NOAA
  4

• Error in 1:grep("fleet_name", tolower(names(fleetdefs))) : argument of length 0

  #938 opened 4 months ago by jimianelli
  2

• [Feature]: automatically avoid profile error "At least one parameter needs to be estimated in phase 1"

  #891 opened 6 months ago by iantaylor-NOAA
  6

• Move r4ss into `nmfs-stock-synthesis` organization?

  #815 opened a year ago by iantaylor-NOAA
  0

• [Feature]: Change all instances of gender to sex

  #879 opened a year ago by e-perl-NOAA
  1

• [Bug]: Excessive warnings in `SS_write()`

  #912 opened 6 months ago by okenk
  12

• [Feature]: Surplus production vs. biomass plot

  #910 opened 8 months ago by e-perl-NOAA
  2

• [Feature]: Simplify Diagnostics Done Across Packages

  #926 opened 7 months ago by chantelwetzel-noaa
  9

• [Bug]: Mohn's rho calculation

  #924 opened 7 months ago by MOshima-PIFSC
  1

• [Feature]: show growth across seasons, refine for settlement events

  #921 opened 7 months ago by iantaylor-NOAA
  2

• [Feature]: make axis label smarter in profile plots

  #919 opened 7 months ago by iantaylor-NOAA
  0

• Use native pipe |> and update minimum R version to 4.1.0?

  #916 opened 7 months ago by iantaylor-NOAA
  0

• [Bug]: Fix copy_SS_inputs for new ss3.par format

  #905 opened 8 months ago by e-perl-NOAA
  1

• [Bug]: Jitter issues with rmarkdown

  #901 opened 9 months ago by MOshima-PIFSC
  27

• [Bug]: plotting error associated with Dirichlet-multinomial likelihood applied to generalized size frequency data

  #898 opened 9 months ago by iantaylor-NOAA
  2

• Changes need for SS3 PR 537

  #897 opened 10 months ago by iantaylor-NOAA
  1

• [Bug]: models parameter leads to weird end year vector dynamics in SSplotComparisons

  #861 opened 10 months ago by kellijohnson-NOAA
  4

• [Feature]: Environmental Data display with `SSplotData`

  #863 opened a year ago by MauroMardones
  2

• [Feature]: Might want to add mature_num and mature_bio for time-series plots

  #874 opened a year ago by e-perl-NOAA
  11

• [Feature]: add read of new "maximum_ASEL2" output added for next SS3 version

  #878 opened a year ago by iantaylor-NOAA
  1

• [Feature]: SS3 minimal template set-up

  #864 opened a year ago by e-perl-NOAA
  3

• [Feature]: Add/show plots (mostly comparison plots) to vignette for r4ss

  #867 opened a year ago by e-perl-NOAA
  0

• [Bug]: `SSexecutivesummary(tables = ())` only works for a subset of combinations

  #888 opened a year ago by kellijohnson-NOAA
  1

• [Feature]: Remove likelihood table from `SSexecutivesummary()`

  #887 opened a year ago by kellijohnson-NOAA
  0

• [Bug]: jitter not fully working, test needs improving

  #885 opened a year ago by iantaylor-NOAA
  2

• [Feature]: better error message from `run()`

  #853 opened a year ago by kellijohnson-NOAA
  6

• [Feature]: add figure showing correlation among indices

  #847 opened a year ago by iantaylor-NOAA
  1

• [Bug]: sigma_R_info is misleading for models run with -nohess

  #823 opened a year ago by iantaylor-NOAA
  1

• [Bug]: file permission to execute "ss3" downloaded by get_ss3_exe on non windows OS

  #842 opened a year ago by yukio-takeuchi
  2

• fixed bump in yield curve

  #829 opened a year ago by iantaylor-NOAA
  1

• [Bug]: `SS_write*()` does not change comment on write time

  #857 opened a year ago by kellijohnson-NOAA
  2

• [Feature]: Move text in subplots of composition plots

  #858 opened a year ago by okenk
  4

• [Feature]: Add forecast detail to ss_write function

  #866 opened a year ago by e-perl-NOAA
  1

• [Bug]: Discard rates figure should not have units on y axis

  #860 opened a year ago by kellijohnson-NOAA
  2

• [Feature]: More pronounced fit line for mean length/size/age plots

  #859 opened a year ago by MOshima-PIFSC
  3

• `SS_write()` failed to write when `dir` pointed to recursive directory

  #856 opened a year ago by kellijohnson-NOAA
  1

• `get_ss3_exe()` does not return the path

  #852 opened a year ago by kellijohnson-NOAA
  0

• [Feature]: Removal of unused elements of datlist from SS_readdat_3.30

  #845 opened a year ago by yukio-takeuchi
  1

• more control over legend when you have many fleets

  #843 opened a year ago by iantaylor-NOAA
  0

• [Feature]: provide input with units of spawning output

  #838 opened a year ago by iantaylor-NOAA
  3

• smarter figure titles for mean length/age time series plots

  #837 opened a year ago by iantaylor-NOAA
  0

• [Bug]: SSgetoutput and SS_output throw an error when the covar.ss file contains NAs

  #830 opened a year ago by michellesculley
  7

• [Feature]: develop `sample_ss3()` wrapper for {adnuts}

  #825 opened a year ago by iantaylor-NOAA
  2

• use `@inheritParams` instead of `@template`

  #814 opened a year ago by iantaylor-NOAA
  0

• treatment of excluded index observations in plot comparing all indices?

  #813 opened a year ago by iantaylor-NOAA
  1