Pinned Repositories
awesome-public-datasets
An awesome list of high-quality open datasets in public domains (on-going).
data-science-ipython-notebooks
Continually updated data science Python notebooks: Deep learning (TensorFlow, Theano, Caffe), scikit-learn, Kaggle, Spark, Hadoop MapReduce, HDFS, matplotlib, pandas, NumPy, SciPy, Python essentials, AWS, and various command lines. https://bit.ly/data-notes
mozsprint-data-wrangling
my_atom_settings
backup to sync my atom settings across different machines
my_vimrc
My snpf13-vim customization
radaniba.github.io
my dev website
radaniba's Repositories
radaniba/cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
radaniba/addict
The Python Dict that's better than heroin.
radaniba/basic-bioinf-utilities
Basic bioinformatics utilities by Weronika - useful standalone, and needed for many other packages.
radaniba/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
radaniba/bioinformatics
radaniba/bioinformatics-tools
Awk, bash, python scripts for processing NGS data
radaniba/cgat
CGAT - Computational Genomics Analysis Tools
radaniba/demultadapt
demultadapt - demultiplex fastq file
radaniba/Docker-Terminal
A terminal for Docker containers in js!
radaniba/gridmap
Easily map Python functions onto a cluster using a DRMAA-compatible grid engine like Sun Grid Engine (SGE).
radaniba/gridtk
SGE wrappers to submit grid jobs at Idiap
radaniba/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
radaniba/jcvi
Python utility libraries on genome assembly, annotation and comparative genomics
radaniba/mac-dev-setup
A beginner's guide to setting up a development environment on Mac OS X
radaniba/markdown-editor
Live (Github-flavored) Markdown Editor
radaniba/ngs-analysis
Fork of https://code.google.com/p/ngs-analysis
radaniba/paper-reviews
Summaries of bioinformatics manuscripts associated with transcription regulation.
radaniba/predawn
Predawn is a dark interface and syntax theme for Sublime Text.
radaniba/prettyplotlib
Painlessly create beautiful matplotlib plots.
radaniba/pysamstats
A small Python utility for generating per-position statistics (coverage, etc.) from SAM/BAM files via pysam.
radaniba/sabre
radaniba/schematics
Python Data Structures for Humans™.
radaniba/scikit-bio
Core objects, functions and statistics for working with biological data in Python.
radaniba/scilifelab
Misc code snippets for Science For Life Laboratory
radaniba/screed
a simple read-only sequence database, designed for short reads
radaniba/seq_crumbs
Little sequence file utilities meant to work within Unix pipelines
radaniba/sickle
Windowed Adaptive Trimming for fastq files using quality
radaniba/SimpleSnakemakeTutorial
radaniba/utility
Computational biology utility scripts
radaniba/Zhang-Patena-2014
Code used for the paper "High-throughput genotyping of green algal mutants reveals random distribution of mutagenic insertion sites and endonucleolytic cleavage of transforming DNA" by Zhang, Patena et al. (The Plant Cell, 2014).