rajewsky-lab/openst

bug in preprocessing step

StevenSong opened this issue · 2 comments

sequence_preprocessor is missing a line to return the extracted sequence

def sequence_preprocessor(sequence):
sequence = sequence[crop_seq_slice].strip()
if args.rev_comp:
sequence = reverse_complement_table(sequence)

Thanks!

Could you kindly provide an update on pip? It appears to still be at version 0.0.3. My extracted sequences do not show up in the output table. https://pypi.org/project/openst/