ramyarangan

Lab: Rhiju Das; RNA design

Stanford University

Pinned Repositories

arnie
Python utility to estimate, compare, and reweight RNA energetics across many secondary structure algorithms.
Language:Python96 8 2131
draw_rna
Draw RNA secondary structures in python.
Language:Jupyter Notebook36 10 613
DMS_intron_analysis
Language:Python00
khan-exercises
A framework for building exercises to work with Khan Academy.
Language:JavaScript0 0 00
pre-mRNA_SecStruct
Modeling sequence and structural features for yeast pre-mRNA
Language:Jupyter Notebook00
splice_predictor
Language:TeX00
ssrp_srec_python_workshop_2021
Language:Jupyter Notebook02
VARSseq
Evaluate variants of RNA structure with VARS-seq. Includes scripts for designing variants and analyzing sequencing data.
Language:Python00
Which-Pathway
Which Pathway? Weighting Frequencies of Causal Models of Biological Pathways through Stochastic Simulation and Program Analysis
Language:Shell1 3 00
PyRosetta.notebooks
Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
Language:Jupyter Notebook462 330 33151

ramyarangan/Which-Pathway
Which Pathway? Weighting Frequencies of Causal Models of Biological Pathways through Stochastic Simulation and Program Analysis
Language:Shell1 3 00
ramyarangan/DMS_intron_analysis
Language:Python00
ramyarangan/khan-exercises
A framework for building exercises to work with Khan Academy.
Language:JavaScript0 0 00
ramyarangan/pre-mRNA_SecStruct
Modeling sequence and structural features for yeast pre-mRNA
Language:Jupyter Notebook00
ramyarangan/splice_predictor
Language:TeX00
ramyarangan/ssrp_srec_python_workshop_2021
Language:Jupyter Notebook02
ramyarangan/VARSseq
Evaluate variants of RNA structure with VARS-seq. Includes scripts for designing variants and analyzing sequencing data.
Language:Python00