rando2
Assistant Professor of Computer Science at Smith College (see also @vbilsmith)
Smith CollegeNorthampton, MA
Pinned Repositories
covid19-review
A collaborative review of the emerging COVID-19 literature. Join the chat here:
MashMap
A fast approximate aligner for long DNA sequences
2017-09-21-uiuc
A7
annorxiver
Annotating Rxiv preprints in an automated fashion
covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
docxToManubot
Extract track changes from the body of a DOCX file and push to a manubot project
foxmap
Scripts for Chromosome Assembly of the Red Fox
FoxYmarkers
scripts associated with Rando et al. (2017) Y-Chromosome Markers for the Red Fox
HTCGenotyping
Here is a pipeline I developed to run GATK for variant calling on the biocluster at UIUC, which uses a slurm queue management system
rando2's Repositories
rando2/docxToManubot
Extract track changes from the body of a DOCX file and push to a manubot project
rando2/foxmap
Scripts for Chromosome Assembly of the Red Fox
rando2/A7
rando2/annorxiver
Annotating Rxiv preprints in an automated fashion
rando2/covid-19_sinai_reviews
rando2/covid19-review
A collaborative review of the emerging literature on diagnostics and treatments related to COVID-19
rando2/FoxYmarkers
scripts associated with Rando et al. (2017) Y-Chromosome Markers for the Red Fox
rando2/HTCGenotyping
Here is a pipeline I developed to run GATK for variant calling on the biocluster at UIUC, which uses a slurm queue management system
rando2/dtcdog-ms
rando2/GeneMapperToCSV
Take GeneMapper output files and convert them into a single table in CSV format, allowing you to organize all genotypes for a single individual
rando2/greenelab.com
The website source code for greenelab.com
rando2/greenelab.com-1
The website source code for greenelab.com
rando2/Haverford_Superlab21
Code for the Spring semester of Superlab
rando2/javatest
rando2/jgrade2
An update to the original jGrade for Java 17 and jUnit 5
rando2/lab-website-template
(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more
rando2/MashMap
A fast approximate aligner for long DNA sequences
rando2/MATSS
R Package for Macroecological Analysis of Time Series Structure (MATSS)
rando2/mpmp-manuscript
rando2/msy_mifish
Scripts for working with mifish data
rando2/mtDNA-network
Code & data for red fox mtDNA network construction in pegas (modified)
rando2/onboarding
Onboarding materials for the Greene Lab
rando2/pegas
Population and Evolutionary Genetics Analysis System
rando2/python-docx
Create and modify Word documents with Python
rando2/rheum-plier-data
Data repository for the MultiPLIER project
rando2/rootstock
Clone me to create your Manubot manuscript
rando2/SNPscans
Some scripts for analyzing signals of selection across the fox genome
rando2/try-manubot
playground for testing manubot features
rando2/VBO_scrapeclubs
Code to scrape data from kennel clubs
rando2/yassembly
Scripts for a collaboration on identifying Y-chromosome sequence