Pinned Repositories
AlphaPulldown-template
Protein-protein interaction screening from Kosinski Lab
BCH339N_Predicting_Tumor_Phenotypes_from_Gene_Expression
We use gene expression data to perform gene set enrichments and random forest predictions to distinguish between four tumor types.
BIO331L_Molecular_Biology_Lab
Investigate the effects of knocking out Arabinogalactan protein 31 on CRU3 and OLE1 protein and mRNA expression in Arabidopsis thaliana seedlings.
CS313E_Elements_of_Software_Design
Mini-projects to study algorithms and data stuctures as a part of UT Austin's CS 313E Elements of Software Design course.
M340L_Linear_Algebra_Gaussian_Elimination
Create a SimpleEchelonElimination function to perform Gaussian Elimination for an m × n matrix with partial pivoting to reduce floating point error.
mitonuclear-sd
Investigate the role of mtDNA in the sex determination/development of Potamilus streckersoni, a freshwater mussel with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
SDS375_Data_Visualization_in_R
Mini-projects to study data visualization using ggplot2 for UT Austin's SDS 375 Data Visualization in R course.
SRAlign
a flexible pipeline for short read alignment to a reference
SRAtac
A pipeline for ATAC-seq preprocessing, alignment, peak calling, and read counting. Built on the SRAlign pipeline.
SRAlign
a flexible pipeline for short read alignment to a reference
raqmejtru's Repositories
raqmejtru/AlphaPulldown-template
Protein-protein interaction screening from Kosinski Lab
raqmejtru/BCH339N_Predicting_Tumor_Phenotypes_from_Gene_Expression
We use gene expression data to perform gene set enrichments and random forest predictions to distinguish between four tumor types.
raqmejtru/BIO331L_Molecular_Biology_Lab
Investigate the effects of knocking out Arabinogalactan protein 31 on CRU3 and OLE1 protein and mRNA expression in Arabidopsis thaliana seedlings.
raqmejtru/CS313E_Elements_of_Software_Design
Mini-projects to study algorithms and data stuctures as a part of UT Austin's CS 313E Elements of Software Design course.
raqmejtru/M340L_Linear_Algebra_Gaussian_Elimination
Create a SimpleEchelonElimination function to perform Gaussian Elimination for an m × n matrix with partial pivoting to reduce floating point error.
raqmejtru/mitonuclear-sd
Investigate the role of mtDNA in the sex determination/development of Potamilus streckersoni, a freshwater mussel with doubly uniparental mitochondrial inheritance. Scripts for DESeq2, WGCNA, GSEA, AlphaFold/AlphaPulldown, and mt-sncRNA validation.
raqmejtru/SDS375_Data_Visualization_in_R
Mini-projects to study data visualization using ggplot2 for UT Austin's SDS 375 Data Visualization in R course.
raqmejtru/SRAlign
a flexible pipeline for short read alignment to a reference
raqmejtru/SRAtac
A pipeline for ATAC-seq preprocessing, alignment, peak calling, and read counting. Built on the SRAlign pipeline.