rbatorsky/intro-to-galaxy-ngs-sarscov2

https://rbatorsky.github.io/intro-to-galaxy-ngs-sarscov2/

A Tufts University Research Technology Workshop

Description

This course is an introduction to NGS data using Galaxy on Tufts University's Galaxy server. For support with this workshop or Tufts Galaxy, see our Galaxy documentation or email TTS Research Technology tts-research@tufts.edu

Goals

The workshop has the following steps

Materials Needed

• Chrome web browserworkshop
• Account on Tufts High Performance Compute Cluster
• VPN if accessing the HPC from off campus

Table of Contents

• Next: Introduction Slides
• Introduction to Galaxy
• Obtain Data
• Process Raw Reads
• Read Alignment and Visualization

Acknowledgement

Much of this explanation has been adapted from these sources:

• Galaxy NGS logistics workshop