Short blurb on tools/concepts relevant to my research
GREGOR Can perform enrichments of SNPs in genomic features. We used it previously (Varshney et al 2017) to determine that T2D variants were enriched in RFX footprints (predicted bound motifs). Website
GAT Similar to GREGOR, but does enrichments of genomic features against genomic features. We used for our Thymocyte development paper (Tomonori and Albanus et al 2018). Website
CENTIPEDE Our favorite tool for predicting TF binding from ATAC-seq data. Website