rdinnager

Florida International UniversityUnited States

Pinned Repositories

butterflies
Using deep learning to process images of butterflies from the NHM data portal
Language:Python2 2 00
ecoevodynamo
R package for Eco-Evolutionary simulations using Automatic Differentiation
Language:R3 4 00
fibre
Flexible scalable phylogenetic trait models using integrated nested laplace approximation (INLA)
Language:R3 3 30
greenpipeR
Level-up your pipes in R
Language:R121
impac
R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)
Language:R14 3 101
nichefillr
R package implementing niche filling simulations
Language:R2 3 130
rbff
R interface to Boundary First Flattening (BFF) software (https://geometrycollective.github.io/boundary-first-flattening/).
Language:C++5 3 41
rdinnager.github.com
Russell Dinnage's Open Science Notebook
Language:Ruby2 4 00
slimr
Run and Analyse SLiM Population Genetics Forward Simulations from R.
Language:R7 4 431
trampoline
R package implementing generator based trampolines for deep recursive programming without overflowing the stack (a port of Python https://gitlab.com/ferreum/trampoline to R). Package webpage: https://rdinnager.github.io/trampoline/
Language:R21 3 30

rdinnager's Repositories

rdinnager/impac
R package to create packed image mosaics (inspired by https://github.com/qnzhou/Mosaic)
Language:R14 3 101
rdinnager/slimr
Run and Analyse SLiM Population Genetics Forward Simulations from R.
Language:R7 4 431
rdinnager/fibre
Flexible scalable phylogenetic trait models using integrated nested laplace approximation (INLA)
Language:R3 3 30
rdinnager/deepbills
Project to analyse 3d bird bill morphology using deep learning
Language:R1 3 0
rdinnager/grambank_vae
Code for running variational autoencoders on grambank data for ancestral character estimation.
Language:R1 4 0
rdinnager/phyf
Tibble subclass and vctrs based phylogenetic data format to support phylogenetic modelling in {fibre}, inspired by {sf}
Language:R1 2 10
rdinnager/bioclim_intrinsic_dimension
Code to analyse the intrinsic dimension of the global Bioclim dataset
Language:R2 0
rdinnager/biocman
R package with bioclimatic manifold data
Language:R
rdinnager/causal_PCM
Code related to causal phylogenetic comparative methods paper
rdinnager/cjs_webr
webr coding demonstration about CJS HMM models
Language:JavaScript
rdinnager/dagnn
Minimal R package for creating custom neural network architectures easily using {torch}
Language:R
rdinnager/dgsdm-prelim
Code for some prelimary exploration of the idea of Deep Generative Species Distribution Models (DGSDM)
2 0
rdinnager/diffusion-SDM
Code and notes for new mega-project: Denoising Diffusion models for Species Distribution Modeling
Language:R3 0
rdinnager/fibre_demo
Code highlighting the use of the fibre package for phylogenetic trait modeling. Examples for manuscript 'Reimagining phylogenetic comparative methods for the era of big data'
Language:R2 0
rdinnager/genAISDM
Code for modeling tetrapod distributions jointly via generative AI
Language:R
rdinnager/MINGW-packages
Package scripts for MinGW-w64 targets to build under MSYS2.
Language:Shell2 0
rdinnager/miniphylopic
R package containing the phylopic_mini dataset, an MNIST-like dataset of organism silhouettes with associated taxonomic heirarchy
Language:R2 0
rdinnager/pangenome_sim
Code for simulating evolution of pangenomes in bacterial population using SLiM
rdinnager/phenobase
Classifiers for the Phenobase project
rdinnager/phenovision
Code for classifying phenology from plant images using deep learning computer vision models.
Language:R2 0
rdinnager/phylo_dim_blessing
Code exploring the 'blessing of dimensionality' in phylogenetic trait evolution models
rdinnager/rdinnager.r-universe.dev
R-universe repo
3 1
rdinnager/SDM_datasets
A list of datasets suitable for large-scale Species Distribution Model benchmarking
2 0
rdinnager/sdmpack
R package for SDM course
Language:HTML2 0
rdinnager/SLiM
SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexible, with a built-in scripting language, and has a cross-platform graphical modeling environment called SLiMgui.
Language:C++2 0
rdinnager/slimr_blog
Source for blog about slimr R package
Language:JavaScript2 0
rdinnager/slimr_manuscript
Rmarkdown manuscript describing rslim package
Language:HTML3 0
rdinnager/tidysdm
tidymodels framework for species distribution models
Language:R
rdinnager/torch
R Interface to Torch
Language:C++
rdinnager/torchvision
R interface to torchvision
Language:R