refresh-bio/agc

Query Reference Sample Name

lynnjo opened this issue · 4 comments

lynnjo commented

Is there a way to query AGC for the sample name that was used as the reference? I can get all sample names with the "listset" command but I have a scenario where AGC is used in conjunction with other applications and I need to know what sample name was used as the reference when storing the compressed genomes.

sebastiandeorowicz commented

The feature will be added (also for older archives) in the forthcoming v.3.1. We need 1-2 weeks to complete.

lynnjo commented

Thank you !

sebastiandeorowicz commented

AGC 3.1 is ready. The update add new mode: listref. Python/C/C++ libraries also has new function giving the reference name.

lynnjo commented