Pinned Repositories
alignment-viz
processing and python scripts for creating visualized alignments
annocomba
Automated genome annotation pipeline combining MAKER and funannotate with singularity and snakemake
dockerfiles
A collection of Dockerfiles for different containers I use.
funannotate-docker
Docker container for the funannotate genome annotation pipeline
genomics
some scripts I use in my genomic data analysis workflow
iqtreeGUI
iqtreeGUI - A graphical user interface for IQ-TREE
lichen_genomics
course material for the workshop on lichen genomics 2 in graz
phylociraptor
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
reproducibility-workshop
Materials for the course "Reproducibility in Bioinformatics"
smsi-funannotate
Funannotate Snakemake Singularity Pipeline
reslp's Repositories
reslp/phylociraptor
rapid phylogenomic tree calculator - A highly customizable framework for reproducible phylogenomic inference
reslp/genomics
some scripts I use in my genomic data analysis workflow
reslp/annocomba
Automated genome annotation pipeline combining MAKER and funannotate with singularity and snakemake
reslp/reproducibility-workshop
Materials for the course "Reproducibility in Bioinformatics"
reslp/funannotate-docker
Docker container for the funannotate genome annotation pipeline
reslp/iqtreeGUI
iqtreeGUI - A graphical user interface for IQ-TREE
reslp/dockerfiles
A collection of Dockerfiles for different containers I use.
reslp/smsi-funannotate
Funannotate Snakemake Singularity Pipeline
reslp/correlate
R package for character correlation analyses with phylogenetic trees
reslp/LFS-cazy-comparative
All code for the comparative genome analyses performed in the Resl et. al (2022) NComms paper
reslp/SACCHARIS
Improve functional predictions of uncharacterized sequences for any CAZyme or CBM family
reslp/binner
Run multiple metagenome filtering programs using Docker containers
reslp/2020-03-17-unigraz
reslp/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
reslp/blog
reslp/concat
python script to create concatenated FASTA files for phylogenetic analyses from single locus alignments. concat.py replaces most scripts in the phylo-scripts repository
reslp/demogenas
democratizing genome assembly
reslp/funannotate
Eukaryotic Genome Annotation Pipeline
reslp/haikubuilddocker
Docker image setup for building Haiku operating system.
reslp/homestack
Settings and installation instructions for my rpis at home
reslp/immediate-submit
Immediate_submit script used in many of our snakemake HPC pipelines
reslp/Mitochondrial_genome_assembly
reslp/MitoComp
reslp/nimbio
reslp/phylo-scripts
python scripts for phylogenetics
reslp/quickblast
Script to create a blastdb and quickly blast sequences against it
reslp/reslp.github.io
Homepage
reslp/saccharis-docker
reslp/smsi-minibarcoding
reslp/TEid