rguerillot

getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

POUTINE

POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

RegPrecise

RegPrecise Motif Database

RM-seq

RM-seq is a bioinformatics tool for assessing resistance mutations from complex or pooled resistant bacterial population using barcoded amplicons sequencing data

RM-seq2

Scoary

Pan-genome wide association studies

scripts

srst2

Short Read Sequence Typing for Bacterial Pathogens

stampr_rtisan

Code for reproducing data from STAMPR experiments

InToxSa

Scripts for data processing and analysis for the manuscript: "A novel cytotoxicity screening platform reveals agr-independent mutations in bacteraemia-associated Staphylococcus aureus that promote intracellular persistence' by Hachani etal

rguerillot/scripts

rguerillot/RM-seq

RM-seq is a bioinformatics tool for assessing resistance mutations from complex or pooled resistant bacterial population using barcoded amplicons sequencing data

rguerillot/getting-started-with-genomics-tools-and-resources

Unix, R and python tools for genomics and data science

rguerillot/POUTINE

POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

rguerillot/RegPrecise

RegPrecise Motif Database

rguerillot/RM-seq2

rguerillot/Scoary

Pan-genome wide association studies

rguerillot/srst2

Short Read Sequence Typing for Bacterial Pathogens

rguerillot/stampr_rtisan

Code for reproducing data from STAMPR experiments