rguerillot

rguerillot's Stars

• borenstein-lab/microbiome-metabolome-curated-data

  Language:HTML4924

• stefanogg/staph_adaptation_paper

  Scripts to analyse within-host evolution during S. aureus colonisation and infection

  Language:Python71

• stefanogg/InToxSa

  Scripts for data processing and analysis for the manuscript: "A novel cytotoxicity screening platform reveals agr-independent mutations in bacteraemia-associated Staphylococcus aureus that promote intracellular persistence' by Hachani etal

  Language:HTML2

• esteinig/nf-mvp

  A minimum viable Nextflow pipeline (Bioinformatics Clinic)

  Language:Nextflow31

• bactopia/bactopia

  A flexible pipeline for complete analysis of bacterial genomes

  Language:Nextflow39869

• Significant-Gravitas/AutoGPT

  AutoGPT is the vision of accessible AI for everyone, to use and to build on. Our mission is to provide the tools, so that you can focus on what matters.

  Language:Python167k44.1k

• Peter-Two-Point-O/POUTINE

  POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

  Language:Java93

• damiendevienne/non-layered-tidy-trees

  implementation of algo for plotting non-layered tidy phylogenetic trees (van der Ploeg, 2014)

  Language:R41

• stefanogg/CLOGEN

  Language:Shell2

• naszam/ants-review

  :1st_place_medal: @ETHTurin | KERNEL Genesis Block :seedling: Team @gitcoinco :ant:

  Language:JavaScript325

• drpowell/vennt

  Dynamic Venn diagrams for differential gene expression

  Language:JavaScript2811

• SouthGreenPlatform/panache

  Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence information of pangenomic blocks of sequence or genes in a browser-like display.

  Language:Vue434

• genome/bam-readcount

  Count bases in BAM/CRAM files

  Language:CMake29895

• quadram-institute-bioscience/tatajuba

  Identification and classification of homopolymeric tracts from reads.

  Language:C6

• pycaret/pycaret

  An open-source, low-code machine learning library in Python

  Language:Jupyter Notebook8.8k1.8k

• JosephCrispell/homoplasyFinder

  A tool to identify and annotate homoplasies on a phylogeny and sequence alignment

  Language:R193

• crazyhottommy/getting-started-with-genomics-tools-and-resources

  Unix, R and python tools for genomics and data science

  Language:Shell1.1k346

• simonrharris/SKA

  Split Kmer Analysis

  Language:C++621

• andersgs/harrietr

  An `R` package for various phylogenetic and evolutionary biology data manipulations

  Language:R123

• BioInfoTools/BBMap

  (Not Offical) BBMap short read aligner, and other bioinformatic tools.

  Language:Java208111