rhagenson/relped

Issues

• Ensure codified entries always remain

  #43 opened 5 years ago by rhagenson
  0

• Remove loops

  #42 opened 5 years ago by rhagenson
  0

• Review: Add Brief on Relatedness

  #40 opened 5 years ago by rhagenson
  3

• JOSS paper

  #39 opened 5 years ago by rhagenson
  4

• Add tests

  #34 opened 5 years ago by rhagenson
  13

• --keep-loops deprecation

  #38 opened 5 years ago by rhagenson
  0

• Calling FS when using relatedness and parentage

  #37 opened 5 years ago by ThatLionLady
  2

• "Borrow" Hugo's release procedure

  #35 opened 5 years ago by rhagenson
  1

• Replace --max-distance with relatedness-based option?

  #33 opened 5 years ago by rhagenson
  1

• Ensure one path between any two points

  #31 opened 5 years ago by rhagenson
  2

• Setting --max-distance=1 does not produce PO graph

  #15 opened 5 years ago by rhagenson
  0

• Called HS should have only one step between individuals

  #32 opened 5 years ago by ThatLionLady
  1

• Remove label from unknowns

  #36 opened 5 years ago by rhagenson
  0

• Switch from graph/multi to graph/simple

  #11 opened 5 years ago by rhagenson
  0

• Error on "No Data" individual

  #30 opened 5 years ago by rhagenson
  0

• Option: Remove self-loops

  #29 opened 5 years ago by rhagenson
  0

• Make directed pedigree optional

  #28 opened 5 years ago by rhagenson
  0

• Improve pedigree ranking/grouping/sorting

  #20 opened 5 years ago by rhagenson
  2

• Have ages become younger down the pedigree

  #19 opened 5 years ago by rhagenson
  1

• With demographics, switch to directed graph/pedigree

  #24 opened 5 years ago by rhagenson
  4

• Use parentage info in pedigree

  #22 opened 5 years ago by rhagenson
  1

• Produce optional un/mapped individual IDs inputs

  #16 opened 5 years ago by rhagenson
  0

• Warn of duplicate entries

  #23 opened 5 years ago by rhagenson
  0

• Pedigree from Relatedness

  #1 opened 5 years ago by ThatLionLady
  21

• Overhaul CLI w/ cobra

  #26 opened 5 years ago by rhagenson
  0

• Fix normalization of scores

  #27 opened 5 years ago by rhagenson
  0

• Warn user if the expected columns could not be found

  #25 opened 5 years ago by rhagenson
  1

• Add Installation instructions

  #14 opened 5 years ago by rhagenson
  0

• Demographics file required when optional

  #21 opened 5 years ago by ThatLionLady
  1

• Allow parentage information

  #17 opened 5 years ago by rhagenson
  5

• Limit number of entries?

  #12 opened 5 years ago by rhagenson
  5

• Highlight known individuals in output

  #13 opened 5 years ago by rhagenson
  1

• Allow demographic information

  #4 opened 5 years ago by rhagenson
  7

• Limit ML-Relate Format to 3-columns

  #18 opened 5 years ago by ThatLionLady
  1

• Inconsistent degree

  #10 opened 5 years ago by rhagenson
  2

• Ensure path-finding is using maximal relatedness

  #9 opened 5 years ago by rhagenson
  0

• Relational distance off-by-one

  #8 opened 5 years ago by rhagenson
  0

• Only produce Unknown names that are just long enough

  #7 opened 5 years ago by rhagenson
  3

• Format unknowns differently in pedigree

  #6 opened 5 years ago by rhagenson
  0

• Track "Unknown" individuals non-randomly

  #5 opened 5 years ago by rhagenson
  0

• Refactor to unify input --> graph

  #3 opened 5 years ago by rhagenson
  0

• Refactor to use internal

  #2 opened 5 years ago by rhagenson
  0