rhysf

rhysf's Stars

• whatshap/whatshap

  Read-based phasing of genomic variants, also called haplotype assembly

  Language:Python3411448240

• rhysf/Synima

  Synteny Imager

  Language:Perl604478

• Ensembl/Bio-DB-HTS

  Git repo for Bio::DB::HTS module on CPAN, providing Perl links into HTSlib

  Language:Perl24155316

• rhysf/HaplotypeTools

  A toolkit for identifying recombination and recombinant genotypes

  Language:Perl22623

• rhysf/Diamond2GO

  Language:Perl18201

• rhysf/2speed_genomes

  Code for identifying signatures of 2 speed genomes

  Language:Perl4100

• Ivan-Pchelin/scripts-for-synteny-visualization

  Here are some Python scripts needed to prepare nucleotide sequence data for analysis by Prokka and Synima software

  Language:Python30

• rhysf/Biscap

  Binomial SNP-caller from Pileup (Biscap) and comparison of FDR scripts

  Language:Perl3201

• rhysf/allele_frequencies

  calculate allele frequencies from mpileup format

  Language:Perl2201

• rhysf/Chipseq_analysis_tools

  CAT: ChIPseq Analysis Tools

  Language:Perl1100

• rhysf/ECATools

  Scripts to work with 'Entirely Covered in All' (ECA) positions from VCFs (i.e. sites most useful for phylogenetics)

  Language:Perl1100

• rhysf/FSTwindows

  Calculate FST values across sliding windows

  Language:Perl1100