Pinned Repositories
basespace-dojo
bio-docker
Docker containers for bioinformatics, mostly NGS tools
bio-sparql-otf
Run SPARQL queries on biological data converting them in RDF On The Fly
biogems.info
Tools for keeping track of biogems
bioruby-biolinux
Meta package for BioLinux distribution
bioruby-gem
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
ensembl-docker
Ensembl Dockers, APIs, DB
torque_rm
TORQUE Resource Manager for Ruby. Submit, check and control your job directly from Ruby.
rjpbonnal's Repositories
rjpbonnal/bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
rjpbonnal/bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
rjpbonnal/bfg-master-2020-course_conda
rjpbonnal/2019-elixir-docker_reproducibility_turin
Docker and Reproducibility
rjpbonnal/bfg-master-2020-course_git
rjpbonnal/bfg-master-2020-course_reproducibility
rjpbonnal/bfg-master-2023-course_git
rjpbonnal/bfg-master-2023-course_intro2r
rjpbonnal/bfg-test-01
rjpbonnal/bioconda-recipes
Conda recipes for the bioconda channel.
rjpbonnal/CellOracle
This is the alpha version of the CellOracle package
rjpbonnal/configs
Config files used to define parameters specific to compute environments at different Institutions
rjpbonnal/Cross-language-interfacing
Testing cross-language interfaces
rjpbonnal/dar-tests
rjpbonnal/data-modal
A data resource browser and selector based on DataTables. Used by igv applications for selecting files from ENCODE and other data resources.
rjpbonnal/docker-advanced-course
rjpbonnal/dockerised-php
Docker setup for PHP applications using PHP7-FPM and Nginx
rjpbonnal/dreamhost-dynamic-dns
A Dynamic DNS updater for use with the Dreamhost API
rjpbonnal/igv-utils
rjpbonnal/igv-webapp
IGV Web App
rjpbonnal/igv-widgets
UI widgets for igvteam applications
rjpbonnal/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
rjpbonnal/ms-dial-container
Dockerfile for MS-DIAL Linux software
rjpbonnal/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
rjpbonnal/nextflow
A DSL for data-driven computational pipelines
rjpbonnal/proteinfold
UNDER CONSTRUCTION: Protein 3D structure prediction pipeline
rjpbonnal/quanTIseq
rjpbonnal/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
rjpbonnal/scJSON-LD
Single cells JSON schema for generic downstream analyses
rjpbonnal/unimi-lecture-reproducibility