Pinned Repositories
basespace-dojo
bio-docker
Docker containers for bioinformatics, mostly NGS tools
bio-sparql-otf
Run SPARQL queries on biological data converting them in RDF On The Fly
biogems.info
Tools for keeping track of biogems
bioruby-biolinux
Meta package for BioLinux distribution
bioruby-gem
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
bioruby-ngs
This plugins is intended to wrap the common software used for Next Generation Sequencing data
bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
ensembl-docker
Ensembl Dockers, APIs, DB
torque_rm
TORQUE Resource Manager for Ruby. Submit, check and control your job directly from Ruby.
rjpbonnal's Repositories
rjpbonnal/bioruby-gem
BioGem helps Bioinformaticians start developing plugins/modules for BioRuby creating a scaffold and a gem package
rjpbonnal/bio-sparql-otf
Run SPARQL queries on biological data converting them in RDF On The Fly
rjpbonnal/ensembl-docker
Ensembl Dockers, APIs, DB
rjpbonnal/torque_rm
TORQUE Resource Manager for Ruby. Submit, check and control your job directly from Ruby.
rjpbonnal/basespace-dojo
rjpbonnal/bio-docker
Docker containers for bioinformatics, mostly NGS tools
rjpbonnal/biogems.info
Tools for keeping track of biogems
rjpbonnal/BioInterchange
Generates interchangeable RDF from non-RDF data sources.
rjpbonnal/chef-dc-public
Public configuration for a bioinformatics data center
rjpbonnal/basespace-ruby-sdk
BaseSpace Ruby SDK provides an easy-to-use Ruby environment that enables developers to authenticate users, retrieve data, and upload data from/to the BaseSpace cloud.
rjpbonnal/bioruby-gfastqc
Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-) results from many different samples in a single web page, with charts and tables organized and simplified. The main goal is to speed up the communication process with colleagues (PIs, Biologists, BioInformaticians).
rjpbonnal/bioruby-pipengine
A simple launcher for complex biological pipelines
rjpbonnal/canary
Elixir authorization and resource-loading library for Plug applications.
rjpbonnal/containers
Bioinformatics containers
rjpbonnal/defk
Docker Elastic Fluentd Kibana
rjpbonnal/docker
Docker - the open-source application container engine
rjpbonnal/docker-fluentd-kibana
Docker image for log analytics using Fluentd, Elasticsearch and Kibana
rjpbonnal/doshin
Docker Shell Integration: run images directly from the shell as regular binaries.
rjpbonnal/ecto
A database wrapper and language integrated query for Elixir
rjpbonnal/FALDO-paper
rjpbonnal/gn_exec
Execution daemon for gn_server
rjpbonnal/gn_server
GeneNetwork REST server
rjpbonnal/guix
Mirror of https://git.savannah.gnu.org/cgit/guix.git
rjpbonnal/helios.github.io
rjpbonnal/kaleidomics
rjpbonnal/ngs-tcr-tools
Tools programming in Scala for analysing TCR NGS data
rjpbonnal/Ruby-ElmBioInfo-Course
Ruby @ Elementi di Bioinformatica
rjpbonnal/scallop
a simple Scala CLI parsing library
rjpbonnal/tid
rjpbonnal/yaj
Pilot project for Biohackathon 2017