rmsandu/segmentation-eval

Issues

• Send Screenshots of Axial and Coronal views for the 13 and 40 ml PAV/EAV volumes (same PAV but different EAV)

  #72 opened 5 years ago by rmsandu
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• Statistical tests :

  #68 opened 5 years ago by rmsandu
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• Make schematic drawing in PPT for miv and mev to add into the methods

  #69 opened 5 years ago by rmsandu
  1

• Fig 4 Manuscript Histograms

  #79 opened 5 years ago by rmsandu
  1

• Inner and Outer Ellipsoids

  #64 opened 5 years ago by rmsandu
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• Fig 3 Manuscript Pie-Chart:

  #78 opened 5 years ago by rmsandu
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• Figure 5 Ellipsoid Approximations (MIV + MEV):

  #80 opened 5 years ago by rmsandu
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• Altenative subplots presentations of the graphs

  #67 opened 5 years ago by rmsandu
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• Figure 1 Manuscript PAV vs EAV

  #77 opened 5 years ago by rmsandu
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• Scatter Plot with all groups

  #75 opened 5 years ago by rmsandu
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• Vessel proximity

  #73 opened 5 years ago by rmsandu
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• Plot the 3 MWA devices in one graph with different colours

  #76 opened 5 years ago by rmsandu
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• Re-compute Radiomics for M24 and B06

  #74 opened 5 years ago by rmsandu
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• Statistical analysis

  #61 opened 5 years ago by rmsandu
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• STL volumes for tumor and ablation on subcapsular lesions for liver surface segmentation

  #71 opened 5 years ago by rmsandu
  1

• Energy (kJ) scatter plots

  #70 opened 5 years ago by rmsandu
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• Paired Boxplots

  #66 opened 5 years ago by rmsandu
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• Flowchart scheme for README

  #65 opened 5 years ago by rmsandu
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• Histogram Image Readme

  #62 opened 5 years ago by rmsandu
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• Quantitative ablation pipeline

  #63 opened 5 years ago by rmsandu
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• More simplistic publication ready plots

  #59 opened 5 years ago by rmsandu
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• Deep Lesions vs Subcapsular markers marking

  #46 opened 5 years ago by rmsandu
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• Connected bar plot for ellipsoid volumes

  #58 opened 5 years ago by rmsandu
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• Probabilistic Ablation Modelling

  #60 opened 5 years ago by rmsandu
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• Sphericity index

  #54 opened 5 years ago by rmsandu
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• Ellipsoid fitting

  #57 opened 5 years ago by rmsandu
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• Linear Regression Model in Python

  #56 opened 5 years ago by rmsandu
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• Create DICOM segmentation mask for testing purposes:

  #55 opened 5 years ago by rmsandu
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• Replace EAV voxel-based with the volume of the largest enclosing ellipsoid

  #49 opened 5 years ago by rmsandu
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• Compute Metric for 177 Lesions

  #33 opened 5 years ago by rmsandu
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• Proximity to Vessels Category

  #51 opened 5 years ago by rmsandu
  1

• Plot ratio EAV:PAV (y-axis) w.r.t to the euclidean distance between the tumor center and needle target tip/ diameter of a tumor

  #48 opened 5 years ago by rmsandu
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• Change the interpolation method for griddata

  #53 opened 5 years ago by rmsandu
  1

• Plot by hospital centre

  #52 opened 5 years ago by rmsandu
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• Add Linear Regression line for each subgroup

  #44 opened 5 years ago by rmsandu
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• Boxplots EAV vs PAV

  #47 opened 5 years ago by rmsandu
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• EAV vs s PAV graphs :

  #45 opened 5 years ago by rmsandu
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• Predict Axes with Random Forest Model:

  #38 opened 5 years ago by rmsandu
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• Pie chart marker for scatter plot

  #41 opened 5 years ago by rmsandu
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• Simulate tumor volumes with 5 and 10 margin around

  #43 opened 5 years ago by rmsandu
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• Add Ranges for Tumor Volumes and Chemo Cycles

  #42 opened 5 years ago by rmsandu
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• Perform interpolation for ablation models volumes and axis

  #39 opened 5 years ago by rmsandu
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• Publication Ready Graphs for Ablation and Energy

  #40 opened 5 years ago by rmsandu
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• Extract centroids from the segmentations

  #30 opened 5 years ago by rmsandu
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• Ellipsoid creation

  #31 opened 5 years ago by rmsandu
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• Apply Random Forest

  #36 opened 5 years ago by rmsandu
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• Missing Labe: ValueError('Label (%g) not present in mask. Choose from %s', 255, array([], dtype=uint32))

  #37 opened 5 years ago by rmsandu
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• Add the manufacturer ablation radii into the MAVERRIC Radiomics Export

  #32 opened 5 years ago by rmsandu
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• Compute the ablation and tumor volume using the formula for the ellipsoid and plug-in the 3 axes

  #35 opened 5 years ago by rmsandu
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• Extract sphericity index ablation and tumors

  #34 opened 5 years ago by rmsandu
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