Here are some bits of advice I find sharing frequently, so I set this repository up as a central collection of pages to update and refer people to.
This will focus on bioinformatics, particularly using R.
- overlaps: If you have sets of peaks or genes, someone will want to see a Venn diagram of them.
- public_data_sources: How to find public data, beyond GEO.
- rna-seq: An example RNA-seq pipeline, using EdgeR.
- dplyr and pipes: If you're not already using the tidyverse and this pipe:
%>%, this short guide will change how you code in R for the better. - converting_gene_ids: For converting between entrez, refseq, ensembl, and gene symbols.