Pinned Repositories
bertax
Taxonomic classification of DNA sequences
bertax_training
Training scripts for BERTax
EpiDope
Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
epitop_pred
scripts needed to generate a model which predicts epitops
magnipore
Magnipore: Differential single nucleotide changes of ONT signals
poseidon
PoSeiDon: positive selection detection and recombination analysis pipeline
read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
vegeta
work in progress
vidhop
VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.
viralclust
Small pipeline to cluster viral genomes based on their k-mer content. WiP
RNA Bioinformatics and High-Throughput Analysis Jena's Repositories
rnajena/bertax
Taxonomic classification of DNA sequences
rnajena/poseidon
PoSeiDon: positive selection detection and recombination analysis pipeline
rnajena/vidhop
VIDHOP is a virus host predicting tool. Its able to predict influenza A virus, rabies lyssavirus and rotavirus A.
rnajena/EpiDope
Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
rnajena/viralclust
Small pipeline to cluster viral genomes based on their k-mer content. WiP
rnajena/read5
Wrapper to read fast5, slow5, blow5 and pod5 files.
rnajena/bertax_training
Training scripts for BERTax
rnajena/magnipore
Magnipore: Differential single nucleotide changes of ONT signals
rnajena/vegeta
work in progress
rnajena/epitop_pred
scripts needed to generate a model which predicts epitops
rnajena/RNAswarm
RNAswarm is a nextflow pipeline for differential RNA-RNA interaction analysis using RNA cross-linking methodologies
rnajena/sugar
S*R -- A Python framework for bioinformatics
rnajena/Nanopore_Seq_Metaanalysis
rnajena/pcago-unified
PCAGO is an interactive web service that allows analysis of RNA-Seq read count data with principal component analysis (PCA) and agglomerative clustering. The tool also includes features like read count normalization, filtering read counts by gene annotation and various visualization options.
rnajena/bats_ncrna
A comprehensive annotation of non-coding RNAs in available bat genome assemblies
rnajena/corfusi
cORFusi - correction of ORFs utilizing short-read information
rnajena/mycovista
Mycovista - M. bovis assembly pipeline
rnajena/pcago-electron
Runs PCAGO as standalone desktop application using the Electron framework.
rnajena/read5_ont
Wrapper to read fast5 and pod5 files.
rnajena/anchorna
Find anchors in RNA/DNA sequences
rnajena/pcago
Interactive web service that allows analysis of RNA-Seq read count data with PCA and clustering.