rnajena/viralclust

Issues

• RAM vs Diskspace trade off

  #21 opened 2 years ago by klamkiew
  0

• HDBSCAN error for large dataset

  #20 opened 2 years ago by sandraTriebel
  1

• invalid compressed data in ncbi update process

  #19 opened 2 years ago by klamkiew
  0

• better restrictions for yml files

  #18 opened 2 years ago by klamkiew
  0

• NCBI Accession IDs enhancement

  #4 opened 3 years ago by klamkiew
  1

• sort_sequences: different default behavior

  #15 opened 3 years ago by klamkiew
  0

• use PCA instead of UMAP as default dimension reduction for HDBscan

  #17 opened 3 years ago by klamkiew
  0

• nextflow exits if HDBSCAN has no unclustered sequences

  #16 opened 3 years ago by klamkiew
  0

• unclustered sequences in final set in mmseqs2

  #10 opened 3 years ago by klamkiew
  0

• grep command in sumaclust.nf to filter singleton cluster

  #14 opened 3 years ago by klamkiew
  0

• Inconsistent use of the label revComp/revcomp

  #13 opened 4 years ago by matthuska
  2

• evaluation script is executed 5 times for each cluster tool

  #12 opened 4 years ago by klamkiew
  0

• Preprocessing filter for large stretches of consecutive Ns

  #11 opened 4 years ago by klamkiew
  0

• UpSetR plots for representative genomes and GOI

  #9 opened 4 years ago by klamkiew
  0

• NCBI collection year format

  #8 opened 4 years ago by klamkiew
  0

• NCBI annotation via Regex

  #7 opened 4 years ago by klamkiew
  1

• parameter/profiles for global and local cluster structures

  #6 opened 4 years ago by klamkiew
  0

• multiprocessing for sort-sequences

  #5 opened 4 years ago by klamkiew
  0

• empty sequences after umap&hdbscan for k=5

  #1 opened 4 years ago by klamkiew
  1

• duplicated sequence in final set

  #2 opened 4 years ago by klamkiew
  0

• divide input sequences for positive / negative strand

  #3 opened 4 years ago by klamkiew
  0