Pinned Repositories
fissa
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
fissa-suite2p-example
This repository provides the notebook for the Binder environment which allows us to run Suite2p.
Francioni-et-al.-eLife-2019
Henschke_et_al_CurrBiology2020
Henschke*, Dylda*, Katsanevaki*, Dupuy, Currie, Amvrosiadis, Pakan* and Rochefort*. Current Biology, 2020.
m2html
Documentation System for MATLAB in HTML
Padamsey-et-al-Neuron-2022
Padamsey*, Katsanevaki, Dupuy and Rochefort*
Pakanetal_CellReport2018
Pakan, Currie, Fischer, Rochefort, Cell Report 2018
sima
Python package for analysis of dynamic fluorescence microscopy data
SimCalc
SimCalc simulates calcium imaging data, with the option for different neural shapes and locations
rochefort-lab's Repositories
rochefort-lab/fissa
A Python toolbox for Fast Image Signal Separation Analysis, designed for Calcium Imaging data.
rochefort-lab/m2html
Documentation System for MATLAB in HTML
rochefort-lab/Pakanetal_CellReport2018
Pakan, Currie, Fischer, Rochefort, Cell Report 2018
rochefort-lab/fissa-suite2p-example
This repository provides the notebook for the Binder environment which allows us to run Suite2p.
rochefort-lab/Francioni-et-al.-eLife-2019
rochefort-lab/Henschke_et_al_CurrBiology2020
Henschke*, Dylda*, Katsanevaki*, Dupuy, Currie, Amvrosiadis, Pakan* and Rochefort*. Current Biology, 2020.
rochefort-lab/Padamsey-et-al-Neuron-2022
Padamsey*, Katsanevaki, Dupuy and Rochefort*
rochefort-lab/sima
Python package for analysis of dynamic fluorescence microscopy data
rochefort-lab/SimCalc
SimCalc simulates calcium imaging data, with the option for different neural shapes and locations