rohanshad
Writing code in an effort to understand cardiovascular disease. Cardiac Surgery resident at the University of Pennsylvania
Division of Cardiovascular SurgeryUniversity of Pennsylvania
Pinned Repositories
ACMIL
WSI classification
cellranger_dispatch
Fire and forget python wrapper for single cell RNA pre-processing with cellranger
cfd_circulation_hf
Accessory scripts for CFD and Aortic Incompetence in LVAD patients paper
cmr_toolkit
Preprocessing utilities for cardiac MRI deep learning projects
deML
Maximum likelihood demultiplexing
dVRL
Contains Reinforcement Learning environments for the da Vinci Surgical System
kinetics-downloader
Simple tool to download videos from kinetics dataset.
postop_rv_failure_echo
Code repository for "Predicting post-operative right ventricular failure using video-based deep learning"
pycox
Survival analysis with PyTorch
sci-RNA-seq3_pipeline
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
rohanshad's Repositories
rohanshad/postop_rv_failure_echo
Code repository for "Predicting post-operative right ventricular failure using video-based deep learning"
rohanshad/cmr_toolkit
Preprocessing utilities for cardiac MRI deep learning projects
rohanshad/cfd_circulation_hf
Accessory scripts for CFD and Aortic Incompetence in LVAD patients paper
rohanshad/pycox
Survival analysis with PyTorch
rohanshad/ACMIL
WSI classification
rohanshad/cellranger_dispatch
Fire and forget python wrapper for single cell RNA pre-processing with cellranger
rohanshad/deML
Maximum likelihood demultiplexing
rohanshad/dVRL
Contains Reinforcement Learning environments for the da Vinci Surgical System
rohanshad/kinetics-downloader
Simple tool to download videos from kinetics dataset.
rohanshad/nichenetr
NicheNet: predict active ligand-target links between interacting cells
rohanshad/sci-RNA-seq3_pipeline
Processing pipeline scripts for sci-RNA-seq3 (bash, R, python)
rohanshad/mae_st
Official Open Source code for "Masked Autoencoders As Spatiotemporal Learners"
rohanshad/Phantom
Effective DICOM anonymization in Python
rohanshad/protein-design-tutorials
Tutorials, cheat sheets, and other resources for computational methods for protein design.
rohanshad/seq_scripts
Scripts used for all lab bio-informatics work
rohanshad/svFSI
SimVascular svFSI
rohanshad/tensorflow
An Open Source Machine Learning Framework for Everyone
rohanshad/TimeSformer
The official pytorch implementation of our paper "Is Space-Time Attention All You Need for Video Understanding?"
rohanshad/torch_videovision
Transforms for video datasets in pytorch
rohanshad/Transformer-Explainability
[CVPR 2021] Official PyTorch implementation for Transformer Interpretability Beyond Attention Visualization, a novel method to visualize classifications by Transformer based networks.
rohanshad/UKB
Download UKB bulk data