romain-lopez

I am a joint postdoctoral scholar at Stanford University and Genentech Research and Early Development, hosted by Jonathan Pritchard and Aviv Regev

@Genentech & @Stanford

Pinned Repositories

bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.7k 96 1.9k3.3k
edward
A probabilistic programming language in TensorFlow. Deep generative models, variational inference.
Language:Jupyter Notebook4.8k 272 514758
sVAE
Language:Python57 6 35
DestVI-reproducibility
Reproducing the experiments of the DestVI paper
Language:Jupyter Notebook17 1 26
HCV
Information Constraints on Auto-Encoding Variational Bayes
Language:Python10 2 12
PhD-dissertation
Language:TeX1 1 00
scVI-reproducibility
Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
Language:Jupyter Notebook56 5 220
scvi-tools
Deep probabilistic analysis of single-cell and spatial omics data
Language:Python1.3k 26 1k366
scvi-tutorials
Notebooks used in scvi-tools tutorials
Language:Jupyter Notebook47 7 5225
awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
3.3k 248 23995

romain-lopez's Repositories

romain-lopez/scVI-reproducibility
Reproducing the experiments of the paper "Deep generative modeling for single-cell transcriptomics"
Language:Jupyter Notebook56 5 220
romain-lopez/DestVI-reproducibility
Reproducing the experiments of the DestVI paper
Language:Jupyter Notebook17 1 26
romain-lopez/HCV
Information Constraints on Auto-Encoding Variational Bayes
Language:Python10 2 12
romain-lopez/PhD-dissertation
Language:TeX1 1 00