Error when running addPercentMtRibo
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rpolicastro commented
Running addPercentMtRibo on a Seurat v3 object produces an error.
seurat <- addPercentMtRibo(seurat, organism="hg", gene_nomenclature="name")
Error: Unknown TZ UTC
R version 3.5.1 (2018-07-02)
Platform: x86_64-conda_cos6-linux-gnu (64-bit)
Running under: Red Hat Enterprise Linux Server 7.5 (Maipo)
Matrix products: default
BLAS/LAPACK: /gpfs/home/r/p/rpolicas/Carbonate/.conda/envs/cerebro/lib/R/lib/libRblas.so
locale:
[1] C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
other attached packages:
[1] cerebroPrepare_1.0.0 Seurat_3.0.0
loaded via a namespace (and not attached):
[1] httr_1.4.0 tidyr_0.8.3 jsonlite_1.6
[4] viridisLite_0.3.0 splines_3.5.1 lsei_1.2-0
[7] R.utils_2.8.0 gtools_3.8.1 Rdpack_0.11-0
[10] assertthat_0.2.1 ggrepel_0.8.1 globals_0.12.4
[13] pillar_1.3.1 lattice_0.20-38 reticulate_1.12
[16] glue_1.3.1 digest_0.6.18 RColorBrewer_1.1-2
[19] SDMTools_1.1-221.1 colorspace_1.4-1 cowplot_0.9.4
[22] htmltools_0.3.6 Matrix_1.2-17 R.oo_1.22.0
[25] plyr_1.8.4 pkgconfig_2.0.2 bibtex_0.4.2
[28] tsne_0.1-3 listenv_0.7.0 purrr_0.3.2
[31] scales_1.0.0 RANN_2.6.1 gdata_2.18.0
[34] Rtsne_0.15 tibble_2.1.1 ggplot2_3.1.1
[37] ROCR_1.0-7 pbapply_1.4-0 lazyeval_0.2.2
[40] survival_2.44-1.1 magrittr_1.5 crayon_1.3.4
[43] R.methodsS3_1.7.1 future_1.13.0 nlme_3.1-139
[46] MASS_7.3-51.4 gplots_3.0.1.1 ica_1.0-2
[49] tools_3.5.1 fitdistrplus_1.0-14 data.table_1.12.2
[52] hms_0.4.2 gbRd_0.4-11 stringr_1.4.0
[55] plotly_4.9.0 munsell_0.5.0 cluster_2.0.9
[58] irlba_2.3.3 compiler_3.5.1 rsvd_1.0.0
[61] caTools_1.17.1.2 rlang_0.3.4 grid_3.5.1
[64] ggridges_0.5.1 htmlwidgets_1.3 igraph_1.2.4.1
[67] bitops_1.0-6 npsurv_0.4-0 gtable_0.3.0
[70] codetools_0.2-16 reshape2_1.4.3 R6_2.4.0
[73] gridExtra_2.3 zoo_1.8-5 dplyr_0.8.0.1
[76] future.apply_1.2.0 readr_1.3.1 KernSmooth_2.23-15
[79] metap_1.1 ape_5.3 stringi_1.4.3
[82] parallel_3.5.1 Rcpp_1.0.1 sctransform_0.2.0
[85] png_0.1-7 tidyselect_0.2.5 lmtest_0.9-37