rootnx

rootnx's Stars

• facebookresearch/esm

  Evolutionary Scale Modeling (esm): Pretrained language models for proteins

  Language:Python3.5k64320671

• lucidrains/vector-quantize-pytorch

  Vector (and Scalar) Quantization, in Pytorch

  Language:Python3k31148243

• smaranjitghose/awesome-portfolio-websites

  A community maintained open source project aimed at making a personal portfolio for researchers, developers, and analysts simple, fast, and less cumbersome. We make sure you have a full-fledged website to showcase your work while you can spend time on your learning and innovative endeavors.

  Language:HTML2.5k315071.6k

• EleutherAI/pythia

  The hub for EleutherAI's work on interpretability and learning dynamics

  Language:Jupyter Notebook2.4k34110180

• evolutionaryscale/esm

  Language:Python1.8k34151207

• NVlabs/edm

  Elucidating the Design Space of Diffusion-Based Generative Models (EDM)

  Language:Python1.6k3027156

• lucidrains/alphafold3-pytorch

  Implementation of Alphafold 3 from Google Deepmind in Pytorch

  Language:Python1.4k4656174

• dauparas/ProteinMPNN

  Code for the ProteinMPNN paper

  Language:Jupyter Notebook1.2k24101333

• andyzoujm/representation-engineering

  Representation Engineering: A Top-Down Approach to AI Transparency

  Language:Jupyter Notebook806284993

• yaoyao-liu/minimal-light

  A simple and elegant Jekyll theme for an academic personal homepage

  Language:CSS749415636

• LirongWu/awesome-protein-representation-learning

  Awesome Protein Representation Learning

  64024274

• ZhuiyiTechnology/t5-pegasus

  中文生成式预训练模型

  Language:Python56234384

• westlake-repl/SaProt

  Saprot: Protein Language Model with Structural Alphabet (AA+3Di)

  Language:Python41978341

• renmada/t5-pegasus-pytorch

  Language:Python41328161

• HuthLab/semantic-decoding

  Language:Python2047839

• SCIR-HI/Bian-Que_Pien-Chueh

  Repo for our new knowledge-based Chinese Medical Large Language Model, BianQue (扁鹊, Pien-Chueh). Coming soon.

  108810

• ai4protein/ProSST

  Code for ProSST: A Pre-trained Protein Sequence and Structure Transformer with Disentangled Attention.

  Language:Python94377

• gcorso/disco-diffdock

  Code for the paper DisCo-Diff: Enhancing Continuous Diffusion Models with Discrete Latents, ICML 2024

  Language:Python83132

• gallantlab/voxelwise_tutorials

  Voxelwise Encoding Model tutorials from the Gallant lab.

  Language:Jupyter Notebook734914

• zhengkangjie/ESM-AA

  Language:Python64546

• HuthLab/deep-fMRI-dataset

  Code accompanying data release of natural language listening fMRI data (LeBel et al.)

  Language:Python5951112

• A4Bio/RDesign

  The official implementation of the ICLR'24 paper RDesign: Hierarchical Data-efficient Representation Learning for Tertiary Structure-based RNA Design.

  Language:Python39090

• Dapid/tmscoring

  Python implementation of the TMscore program

  Language:Python362912

• steineggerlab/foldseek-analysis

  Scripts to benchmark and train foldseek

  Language:Jupyter Notebook35394

• subbareddy248/Awesome-Brain-Encoding--Decoding

  35303

• HuthLab/speechmodeltutorial

  Language:HTML323020

• SCIR-HI/ArtificiallyR2R

  Repository for AAAI 2024 paper "From Artificially Real to Real: Leveraging Pseudo Data from Large Language Models for Low-Resource Molecule Discovery"

  Language:Python22321

• cameronphchen/SRM

  Shared Response Model (SRM) of NIPS 2015

  Language:Python216212

• seisman/academic-homepage

  My academic homepage

  Language:HTML143015

• SCIR-HI/prompt_n_paraphrase

  Repository for COLING 2022 paper "Prompt Combines Paraphrase: Teaching Pre-trained Models to Understand Rare Biomedical Words"

  8100