Royer Lab at CZB SF

Official organisation of the Royer Lab where all the freaking cool stuff is cooked

United States of America

Pinned Repositories

aydin
Aydin — User-friendly, Fast, Self-Supervised Image Denoising for All.
Language:Python149 4 4214
cytoself
Self-supervised models for encoding protein localization patterns from microscopy images
Language:Python73 5 2215
daxi
High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
Language:Python25 8 12
dexp
Dataset EXploration & Processing
Language:Python29 9 256
napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
Language:CSS238 10 2325
napari-segment-anything
Segment Anything Model (SAM) native Qt UI
Language:Python190 7 1817
napari-segment-anything-2
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
Language:Python202
ssi-code
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion
Language:Python28 7 210
ultrack
Cell tracking and segmentation software
Language:Python87 5 5711
ZAF
ZAF(Zebrafish Automated Feeder): Software needed for automated fish feeding system of our fish facility
Language:Python4 2 11

Royer Lab at CZB SF's Repositories

royerlab/napari-chatgpt
A napari plugin to process and analyse images with chatGPT!
Language:CSS238 10 2325
royerlab/napari-segment-anything
Segment Anything Model (SAM) native Qt UI
Language:Python190 7 1817
royerlab/aydin
Aydin — User-friendly, Fast, Self-Supervised Image Denoising for All.
Language:Python149 4 4214
royerlab/ultrack
Cell tracking and segmentation software
Language:Python87 5 5711
royerlab/cytoself
Self-supervised models for encoding protein localization patterns from microscopy images
Language:Python73 5 2215
royerlab/dexp
Dataset EXploration & Processing
Language:Python29 9 256
royerlab/ssi-code
Image Deconvolution via Noise-Tolerant Self-Supervised Inversion
Language:Python28 7 210
royerlab/daxi
High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy
Language:Python25 8 12
royerlab/napari-segment-anything-2
Native Qt interface for Meta's Segment Anything 2 in Images and Videos
Language:Python202
royerlab/slurmkit
Simple SLURM python API
Language:Python7 2 01
royerlab/in-silico-fate-mapping
Language:Python5 1 21
royerlab/ZAF
ZAF(Zebrafish Automated Feeder): Software needed for automated fish feeding system of our fish facility
Language:Python4 2 11
royerlab/zebrahub-paper-umap-3d
Generate 3D UMAPs of zebrafish
Language:Python4 1 01
royerlab/czpeedy
A tool for experimentally determining the best tensorstore spec for a given machine and dataset.
Language:Python3
royerlab/napari-umap
Language:Python2 1 00
royerlab/ultrack-i2k2023
Ultrack https://github.com/royerlab/ultrack from Images to Knowledge - 2023 workshop
Language:Jupyter Notebook2 1 0
royerlab/dexpv2
Language:Python1 4 1
royerlab/napari-aydin
Language:Python1 1 41
royerlab/opensimview
New ClearControl + Dorado +.... combined repo
Language:Java1 1 01
royerlab/zebrahub-napari-animation
Zebrahub's napari-animation demo
Language:Python1 1 0
royerlab/zebrahub-protocols
1 1 0
royerlab/.github
1 0
royerlab/daxi-controller
Language:HTML5 1
royerlab/imagej.github.io
The ImageJ wiki
Language:JavaScript
royerlab/napari-3D-rotation
Generate rotating 3D UMAP in napari
Language:Python1 01
royerlab/napari-dexp
Language:Python3 23
royerlab/preprints
All Royer lab preprints can be found here
1 0
royerlab/softcopy
Copies zarr archives from an acquisition frontend to a different disk, using filesystem watching and lockfiles to allow copying during acquisition
Language:Python
royerlab/ultrack-imagej
Language:Java
royerlab/zebrahub-paper-hcr-analysis
Scripts for analyzing HCR data for zebrafish tail.
Language:Python