royerlab/cytoself

Issues

• Setup of full .npy dataset?

  #37 opened 10 months ago by amulyagarimella
  2

• Labels that don't match up with available images

  #36 opened 10 months ago by amulyagarimella
  3

• PicklingError: Can't pickle <function DataManagerOpenCell.<lambda>

  #32 opened a year ago by gitclipp
  3

• Pickling error running CytoselfFullTrainer

  #33 opened a year ago by sheryllin111
  2

• Packages missing + embedding_dim is required for vq_args

  #28 opened a year ago by sheryllin111
  1

• Suggest setting the exact package version for torch in requirements.txt

  #30 opened a year ago by jmhb0
  2

• Early stopping does not count consecutive steps on pytorch branch

  #29 opened a year ago by jmhb0
  2

• UMap not looking good

  #27 opened a year ago by sofroniewn
  14

• ModuleNotFoundError: No module named 'cytoself.datamanager'

  #26 opened a year ago by dedy1179
  1

• Variance normalization

  #24 opened a year ago by sofroniewn
  4

• Dataloader for full dataset

  #23 opened a year ago by sofroniewn
  7

• Release trained model weights

  #25 opened a year ago by sofroniewn
  1

• Nuclear segmentation mask for the original resolution images

  #21 opened 2 years ago by xinyiz98
  1

• The difference between tensorflow and pytorch version

  #19 opened 2 years ago by exogeny
  2

• Installation

  #5 opened 2 years ago by JacobNeumann88
  5

• train！

  #17 opened 2 years ago by Valort-KT
  2

• Google drive links inaccessible/invalid for examples/simple_example

  #12 opened 2 years ago by winch-jm
  2

• Loss weights for optimal training

  #16 opened 2 years ago by parthnatekar
  1

• failure to run plot_clustermaps()

  #11 opened 2 years ago by bkang-mit
  1

• How to normalize the nuclear distance channel?

  #7 opened 2 years ago by JimmyCai91
  5

• Is there any initial file of the manual selected spectrum index?

  #8 opened 2 years ago by TerminatorJ
  1

• Code about Nucleus Segmentation

  #6 opened 2 years ago by Yuangaga
  2