TerminatorJ

BERTLocRNA

Using Large language model to predict localization

CRISPR-TRAP-seq

This is a ML learning model to predict the gRNA efficiency of trap-based editing system. eg.ABE, CBE, Cas9

DeepLocRNA

This is the counterpart of DeepLoc, but in RNA level

DeepRNAgenerator

This is used to generate optimized RNA for vaccine design

delfi_scripts

Find_cell_marker

This is a software for identifying the cell type for single cell analysing

GNL_Scorer

this is a software for sgRNA activity prediction with great generalization

Rankcomp

This is a learning framework to extract the DEG (Differential expression genes) by high fided gene pairs

Rankcomp2

A learning framework to get DEG(Differential expression genes)

RNA-localization

This repository can be used to data sharing, code sharing, and feedbacks

TerminatorJ/GNL_Scorer

this is a software for sgRNA activity prediction with great generalization

TerminatorJ/DeepLocRNA

This is the counterpart of DeepLoc, but in RNA level

TerminatorJ/Find_cell_marker

This is a software for identifying the cell type for single cell analysing

TerminatorJ/CRISPR-TRAP-seq

This is a ML learning model to predict the gRNA efficiency of trap-based editing system. eg.ABE, CBE, Cas9

TerminatorJ/RNA-localization

This repository can be used to data sharing, code sharing, and feedbacks

TerminatorJ/BERTLocRNA

Using Large language model to predict localization

TerminatorJ/DeepRNAgenerator

This is used to generate optimized RNA for vaccine design

TerminatorJ/delfi_scripts

TerminatorJ/Rankcomp

This is a learning framework to extract the DEG (Differential expression genes) by high fided gene pairs

TerminatorJ/Rankcomp2

A learning framework to get DEG(Differential expression genes)

TerminatorJ/ABE_CBE_spCas9

Model with great generalization applied in the trap-ABE, trap-CBE, and trap-spCas9

TerminatorJ/cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

TerminatorJ/CellphoneDB

CellPhoneDB can be used to search for a particular ligand/receptor, or interrogate your own HUMAN single-cell transcriptomics data.

TerminatorJ/cytoself

Self-supervised models for encoding protein localization patterns from microscopy images

TerminatorJ/Deep-Learning

TerminatorJ/DNABERT

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

TerminatorJ/GNL_script

The script of the paper

TerminatorJ/GNL_supplementary_script

TerminatorJ/graph-part

A biological sequence data partitioning method

TerminatorJ/hellow-world

this is my first time in github

TerminatorJ/ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

TerminatorJ/IntroToML-scVAE

This is an instruction for scVAE about how it works and how to run the demo scripts

TerminatorJ/LLMbenchmarking

Benchmarking the language model in genomic and transcriptome level

TerminatorJ/RCTD

TerminatorJ/scDeepCluster

scDeepCluster for Single Cell RNA-seq data

TerminatorJ/ST_simulation

TerminatorJ/Trap-CRISPR

This is a ML learning model to predict the gRNA efficiency of trap-based editing system. eg.ABE, CBE, Cas9

TerminatorJ/Trap-seq-Data-Processing

The scripts of score comparison shown in the Trap-seq paper

TerminatorJ/UHCA

UHCA

TerminatorJ/Xenium_benchmarking

Code used to benchmark Xenium