roysomak4
Associate Professor of Pathology
Cincinnati Children's Hospital Medical CenterCincinnati, OH
Pinned Repositories
BCOR_ITD_ext
BCOR-ITD script modified from FLT3_ITD_ext
clinvar-preprocess
Preprocess ClinVar database for integration into custom variant annotation solution
cnaplotr
Python package for generating copy number alteration (CNA) plots
cosmic-preprocess
Script to process cosmic VCF and Mutant export data to generate tumor site counts per variant
cosmic_db_download
utility to download COSMIC database files
docker-airflow
Docker Apache Airflow
elprep
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
FLT3_ITD_ext
FLT3-ITD script based on in-silico extension and clustering
gdrive_download_file
download file from google drive
ngs_bio_workshop
Instructions and scripts for NGS bioinformatics hands on workshop
roysomak4's Repositories
roysomak4/ngs_bio_workshop
Instructions and scripts for NGS bioinformatics hands on workshop
roysomak4/cnaplotr
Python package for generating copy number alteration (CNA) plots
roysomak4/BCOR_ITD_ext
BCOR-ITD script modified from FLT3_ITD_ext
roysomak4/clinvar-preprocess
Preprocess ClinVar database for integration into custom variant annotation solution
roysomak4/cosmic-preprocess
Script to process cosmic VCF and Mutant export data to generate tumor site counts per variant
roysomak4/cosmic_db_download
utility to download COSMIC database files
roysomak4/docker-airflow
Docker Apache Airflow
roysomak4/elprep
elPrep: a high-performance tool for preparing sequence alignment/map files in sequencing pipelines.
roysomak4/FLT3_ITD_ext
FLT3-ITD script based on in-silico extension and clustering
roysomak4/gdrive_download_file
download file from google drive
roysomak4/grip-informatics
roysomak4/gzstream
gzstream
roysomak4/imageclassifier
Project to learn image classification using tensorflow and openCV
roysomak4/insilico-mutagenesis-instructions
Instructions to perform insilico mutagenesis using InSim
roysomak4/insiM
roysomak4/itdseek
FLT3 ITD detection (ITDseek) and simulation (ITDsim)
roysomak4/kickstart.nvim
A launch point for your personal nvim configuration
roysomak4/new_shell_setup
scripts to setup shell environment
roysomak4/portainer
Docker compose file for deploying portainer and agent services
roysomak4/pseudo-phi
Generates fictious patient information for healthcare software development and testing
roysomak4/sra-toolkit-docker
roysomak4/ss-cert
Shell script to generate self-signed certificates for a domain
roysomak4/uta
Universal Transcript Archive: comprehensive genome-transcript alignments; multiple transcript sources, versions, and alignment methods; available as a docker image
roysomak4/uta-docker
Dockerfile and instructions to build custom docker image for UTA
roysomak4/VarBen
roysomak4/varbench
benchmarking tool for comparing DNA sequence variants
roysomak4/VarDictJava
VarDict Java port
roysomak4/VarNomen
roysomak4/vim-setup
.vimrc and other useful stuff