roysomak4
Associate Professor of Pathology
Cincinnati Children's Hospital Medical CenterCincinnati, OH
roysomak4's Stars
omgenomics/bio-data-zoo
Example genomics data for tool developers
adamewing/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
lmdu/pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
brentp/echtvar
using all the bits for echt rapid variant annotation and filtering
ht50/FLT3_ITD_ext
FLT3-ITD script based on in-silico extension and clustering
brentp/mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
GoalConsortium/goal_misc
This is to share bioinformatics analysis for the GOAL Consortium Bioinformatics Group
mskcc/facets
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
nccl-jmli/VarBen
higlass/higlass-pileup
thesushantpatil/insiM
pearcetm/jscomut
An interactive co-mutation plot generator, in-browser but fully client-side. Load a data file, play with the geometry of the chart, explore your data, and save an svg file.
gnachman/iTerm2
iTerm2 is a terminal emulator for Mac OS X that does amazing things.
biocommons/hgvs
Python library to parse, format, validate, normalize, and map sequence variants. `pip install hgvs`