Pinned Repositories
ACTINN
Amann_dura_sc_10x
Repository for the single-cell RNA-Seq analysis of Dura mater immune cells
brain-immune-resource
Published by Marco Prinz and other members of the Institute of Neuropathology at the University Clinic of Freiburg, this resource offers single-cell RNA-Sequencing datasets on brain immune cells from humans and mice under normal and pathological conditions. Its main goal is to ensure accessibility and usability, in line with the FAIR principles.
friedrich-et-al-IDH1wt-mut-micr
genstats
Statistics course for JHU Genomic Data Science Sequence
geth-node
Deploy FixedSupplyToken to Private Network with Web3.js or Web3.py, Geth and Mist
LearnAnalytics-AnalyzingBigDataWithMRS
A tutorial on how to use Microsoft R's RevoScaleR package to process and build models with large datasets.
sankowski-et-al-microglia
sankowski-et-al-pnas-2019
RNA-Seq differential gene expression anlysis
sankowski_et_al_murine_CAMs
This is the code book for the Sankowski et al. manuscript on miren CNS-associated macrophages.
rsankowski's Repositories
rsankowski/idat_data_checksum
rsankowski/sankowski_et_al_murine_CAMs
This is the code book for the Sankowski et al. manuscript on miren CNS-associated macrophages.
rsankowski/eae_microglia
Analysis of 10x EAE microglia dataset
rsankowski/sankowski_et_al_embo_data_upload
Code to generate checksums for the murine CAM dataset
rsankowski/eae_seurat
Seurat analysis of the Jordao et al. 2019 microglia dataset
rsankowski/friedrich-et-al-IDH1wt-mut-micr
rsankowski/trends_review_figures
Explanatory figures for the review in trends
rsankowski/de_strooper_cam_markers
rsankowski/eye_brain_microglia_comparison
Comparison of microglia from the eye and the brain
rsankowski/whole_micr_nuc_seq_comparison
Comparative analysis of whole cell and nuc-seq microglia data
rsankowski/MetaSRA-pipeline
MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
rsankowski/card9_eae
rsankowski/placecell_pca
attempt to compare place cells in different conditions
rsankowski/Bulk_RNAseq_Gl261_idhwt_idhmut_comparison
Comparison of RNA-Seq data of Gl261 IDHwt vs. IDHmut cells
rsankowski/utz_et_al_fetal_murine_cams
single cell RNA seq analysis of murine fetal macrophages
rsankowski/human_eye_scrnaseq_datasets
comparative analysis between human and murine scRNA-Seq datasets
rsankowski/GAM-analysis
code for GAM analysis for collaborator
rsankowski/GF-vs-SPF-microglia
Bulk RNA-Seq analysis of germ-free vs SPF microglia from Erny et al, nat neurosci 2015
rsankowski/mnp_training
DNA methylation-based classification of central nervous system tumours
rsankowski/Ku-et-al-treg-rnaseq
DESeq2 of the bulk RNA-Seq data from Ku et al, 2018 10.1016/j.jaci.2018.04.038
rsankowski/sankowski-et-al-pnas-2019
RNA-Seq differential gene expression anlysis
rsankowski/oktay-mouse-data
Analysis of murine t cell dataset GSE97850
rsankowski/eae-positive-control
plotting EAE control vs onset data
rsankowski/anne-data
Analysis for collaborators
rsankowski/anne-tuan-data-integration
Comparison of independent datasets
rsankowski/mathys-et-al-microglia
analysis of the Mathys et al nature microglia data
rsankowski/schirmer-ms
microglia from the velmeshev et al paper
rsankowski/human-autism-data
microglia-analysis-from-autism-dataset
rsankowski/habib-et-al-droncseq-microglia
Analysis of the dronc seq microglia
rsankowski/taka-mouse-data