Pinned Repositories
bioreader
clj-biosequence
A Clojure library designed to make the manipulation of biological sequence data easier.
clj-blast
Parser for BLAST results.
clj-fasta
Parser for fasta formatted sequences.
clj-genbank
A Clojure interface to GenBank
clj-gff3
A gff3 parsing library for Clojure.
clj-tandem
Parser for X! Tandem XML formatted result files.
clj-translate
DNA and RNA translation library.
clj-uniprot
Parser for uniprot sequences in XML format.
run-tandem
s312569's Repositories
s312569/clj-biosequence
A Clojure library designed to make the manipulation of biological sequence data easier.
s312569/bioreader
s312569/clj-fasta
Parser for fasta formatted sequences.
s312569/clj-gff3
A gff3 parsing library for Clojure.
s312569/clj-uniprot
Parser for uniprot sequences in XML format.
s312569/clj-blast
Parser for BLAST results.
s312569/clj-genbank
A Clojure interface to GenBank
s312569/clj-tandem
Parser for X! Tandem XML formatted result files.
s312569/clj-translate
DNA and RNA translation library.
s312569/run-tandem
s312569/vmaths
Some common maths functions for vectors.
s312569/biodb
Some utilities for storing biological sequences in SQL databases.
s312569/biomarket
s312569/clj-interproscan
A Clojure library for running Interproscan and parsing the results.
s312569/clj-mzml
A Clojure library for parsing mzML files.
s312569/clj-pepxml
A Clojure library for parsing pepxml files.
s312569/clj-protease
Some simple utilities for analysing protease cleavage of protein sequences.
s312569/clj-reciprocal-blast
Clojure library for running reciprocal blast.
s312569/clj-signalp
A Clojure library for running signalP and parsing the results.
s312569/clj-text
Wraps Stanford CoreNLP
s312569/clj-tmhmm
A Clojure library for running TMHMM and parsing the results
s312569/clojure-opennlp
Natural Language Processing in Clojure (opennlp)
s312569/core
Clojure wrapper for the Stanford CoreNLP Java library
s312569/hierarchical-cluster
s312569/jellydb
A website and backend for annotating and displaying integrated transcriptomics and proteomics data.
s312569/msproteomicstools
Some hopefully useful tools for mass spectrometry applied to proteomics
s312569/protein-report
Protein and peptide reports in csv format from X! Tandem xml result files.
s312569/qhshiny
s312569/reverse-database
Creates a reversed database for MS/MS searches
s312569/uniprot2fasta
Converts a UniProt XML formatted file into a FASTA file.