/merge-stats

Getting the statistics files from .hic files

Primary LanguageJavaMIT LicenseMIT

merge-stats

Merging statistics for v9 .hic files

Usage:

java -jar merge-stats.jar <stem> <inter.hic> [inter2.hic ...]
java -jar merge-stats.jar <stem> <inter.txt> [inter2.txt ...]
java -jar merge-stats.jar <stem> <inter_hists.m> [inter2_hists.m ...]

The required arguments are:

  • <stem> should be inter (or inter_30) if inputs are mapq1 (or mapq30)
  • a list of file paths (minimum 1) for either .hic, .txt, or .m files that are to be merged.