Pinned Repositories
Juicebox
Visualization and analysis software for Hi-C data -
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
straw
Extract data quickly from Juicebox via straw
clear-tools
Chromatin Landscape Exploration, Analysis, and Research Tools
deploy-delta
GPUTest
Detecting GPU Installation
hic-emt
java-straw
mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
smart
Subcompartment Mapping, Analysis, and Revision Tools
sa501428's Repositories
sa501428/hic-emt
sa501428/clear-tools
Chromatin Landscape Exploration, Analysis, and Research Tools
sa501428/java-straw
sa501428/deploy-delta
sa501428/mustache
Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation
sa501428/VisoR
Altering Vision via Streamed Optical Remapping -
sa501428/RobustConcurrentKMeans
Robust implementation of Concurrent KMeans to handle missing values
sa501428/smart
Subcompartment Mapping, Analysis, and Revision Tools
sa501428/ABC-Enhancer-Gene-Prediction
Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)
sa501428/BanditPAM
BanditPAM C++ implementation and Python package
sa501428/chrMatcher
Matching chrM genotype to known samples
sa501428/EigenVector
R functions for very fast eigenvector calculation
sa501428/exp-scale
sa501428/hic-pipeline
HiC uniform processing pipeline
sa501428/HiCtoAccessibility
sa501428/igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
sa501428/juicebox.js
HiC contact matrix visualization
sa501428/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
sa501428/MASH
sa501428/merge-stats
Getting the statistics files from .hic files
sa501428/mixer-tools
Machine Intelligence for Xtracting Essential Regions
sa501428/playground
Vault for random code and scripts
sa501428/psf-to-bedpe
Quick conversion script
sa501428/pybindplayground
sa501428/RobustGMM
Robust GMM Implementation
sa501428/sa501428
sa501428/simpleJavaStrawProject
Example of a simple Java Straw project that can be extended or built upon.
sa501428/SIP
SIP: Significant Interaction Peak caller
sa501428/straw
Extract data quickly from Juicebox via straw
sa501428/straw-testing