Aiden Lab

The Center for Genome Architecture

Baylor College of Medicine

Pinned Repositories

3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell203 13 18356
BEAR
BEAR: viral diagnostic analysis pipeline for SARS-CoV-2
Language:Shell7 9 31
EigenVector
R functions for very fast eigenvector calculation
Language:C7 1 04
Juicebox
Visualization and analysis software for Hi-C data -
Language:Java241 23 82458
JuiceboxGUI
Language:Java7 7 11
JuiceboxLegacy
OLD REPOSITORY - Go to
Language:Java32 12 1422
juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Language:Shell412 17 310181
JuicerTools
Language:Java13 7 42
straw
Extract data quickly from Juicebox via straw
Language:C++62 11 6636
welcome
Getting started with Hi-C data analysis
Language:HTML4 6 00

Aiden Lab's Repositories

aidenlab/juicer
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Language:Shell412 17 310181
aidenlab/Juicebox
Visualization and analysis software for Hi-C data -
Language:Java241 23 82458
aidenlab/3d-dna
3D de novo assembly (3D DNA) pipeline
Language:Shell203 13 18356
aidenlab/straw
Extract data quickly from Juicebox via straw
Language:C++62 11 6636
aidenlab/JuiceboxLegacy
OLD REPOSITORY - Go to
Language:Java32 12 1422
aidenlab/JuicerTools
Language:Java13 7 42
aidenlab/BEAR
BEAR: viral diagnostic analysis pipeline for SARS-CoV-2
Language:Shell7 9 31
aidenlab/EigenVector
R functions for very fast eigenvector calculation
Language:C7 1 04
aidenlab/JuiceboxGUI
Language:Java7 7 11
aidenlab/welcome
Getting started with Hi-C data analysis
Language:HTML4 6 00
aidenlab/hic-format
3 9 00
aidenlab/HiCTools
Language:Java3 7 11
aidenlab/JuiceMe
Hi-Culfite Processing Pipeline
Language:Shell3 8 01
aidenlab/pyStraw
Python only flavor of straw for streaming .hic data [Deprecated]
Language:Jupyter Notebook2 6 01
aidenlab/MDsimulations
Simulation code
Language:Python1 5 01
aidenlab/3d-carta
Language:Shell5 1
aidenlab/bwa-meth
fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome
Language:PostScript1 0
aidenlab/clear-tools
Chromatin Landscape Exploration, Analysis, and Research Tools
Language:Java0 0
aidenlab/contact-probability
Updated Adrian's code
Language:Python2 1
aidenlab/hic2gatk
Language:Shell6 0
aidenlab/java-straw
Language:Java1 01
aidenlab/juicebox.js
HiC contact matrix visualization
Language:JavaScript2 02
aidenlab/JuiceboxReader
[Deprecated] Fast reading/dump for .hic files
Language:C++4 2
aidenlab/juicer_old
Aiden Lab old version of Juicer, for archival purposes
Language:Python4 0
aidenlab/mcph1_notebook
Language:Jupyter Notebook6 01
aidenlab/mmba
Moshe's matrix balancing algorithm
Language:C9 3
aidenlab/PAP
Language:Shell0 0
aidenlab/sw2stl
Language:Python
aidenlab/welcome-images
5 0