aidenlab/straw

Issues

• can't install hic-straw on win11 python3.9

  #129 opened a year ago by fazhang-master
  6

• Crash when trying to fetch a normalization that's not present

  #137 opened 4 months ago by jonathancasper
  1

• Error finding block data

  #123 opened 2 years ago by DavidWarrenKatz
  4

• Had to add an include statement in the straw.cpp file

  #136 opened 6 months ago by princeps091-binf
  0

• pip install command not listed in README

  #85 opened 3 years ago by paulmenzel
  5

• error: File doesn't have the given chr_chr map.

  #132 opened 9 months ago by charlottewright
  0

• Segmentation fault with plot_hic_map

  #131 opened 10 months ago by AlcaArctica
  0

• 想知道具体参数的上下限，getRecordsAsMatrix和getRecords分别得到什么信息？

  #130 opened a year ago by xiangyanghuakai666
  0

• can't install hic-straw on win11 python3.9

  #128 opened a year ago by fazhang-master
  0

• Could not install on windows.

  #115 opened 2 years ago by liudonghua123
  3

• Error installing in Pycharm

  #101 opened 3 years ago by MahdiSayadSadr
  3

• Can't install hic-straw with pip in conda

  #112 opened 2 years ago by mozesjacobs
  6

• Installation on Linux not working?

  #120 opened 2 years ago by Phlya
  3

• Segmentation fault when calling mzd.getRecordsAsMatrix

  #125 opened a year ago by WangJiuming
  4

• straw binaries for linux is missing

  #124 opened a year ago by zhangli271828
  0

• plot heatmap from the raw hic file(get from the juicer)

  #122 opened 2 years ago by ChenDepp
  3

• What is 'NaN' in the third column in retreived txt files

  #121 opened 2 years ago by jiangshan529
  18

• Python: when c2 <= c1 output is not flipped back

  #119 opened 2 years ago by lldelisle
  0

• Configure query

  #118 opened 2 years ago by Sen0108
  3

• Update readme for import straw

  #117 opened 2 years ago by obada-alzoubi
  0

• Q: Fastest way to determine if mzd has no records

  #116 opened 2 years ago by reg-el
  1

• Is there a way to extract the inter-balanced matrix or the genome-wide matrix?

  #113 opened 2 years ago by mellofariam
  3

• strawR update

  #107 opened 3 years ago by sa501428
  3

• straw and strawr don't dump same values

  #99 opened 3 years ago by ArielPaulson
  1

• Straw takes too much time to run locally in comparison to Collab notebook.

  #88 opened 3 years ago by BlackPianoCat
  3

• In case of detected errors, straw prints them and returns instead of raising an Exception

  #83 opened 3 years ago by Balthasar-eu
  1

• Declare curl in SystemRequirements in the R package

  #80 opened 3 years ago by Enchufa2
  4

• is the strawc package on bioconda official?

  #75 opened 3 years ago by TTTPOB
  5

• not enough arguments

  #74 opened 3 years ago by TheCatalyticMicroChip
  5

• Long running then return an empty list (Python version)

  #68 opened 3 years ago by Nanguage
  2

• Incompatible function signature introduced by a recent commit (0e9cfa)

  #60 opened 4 years ago by haizi-zh
  6

• __init__() takes from 2 to 3 positional arguments but 7 were given

  #63 opened 4 years ago by damianv98
  0

• read header error

  #57 opened 4 years ago by antarikshtyagi
  4

• -bash: ./straw: Permission denied

  #54 opened 4 years ago by LucasPhilipp
  2

• Potential bug in straw python version

  #45 opened 4 years ago by BaconZhou
  0

• the error of test data

  #56 opened 4 years ago by ningwei-wei
  3

• Straw update to v9

  #59 opened 4 years ago by nchernia
  1

• Update read hic header to handle v9

  #58 opened 4 years ago by nchernia
  0

• Issue loading .hic file from 4DN Data Portal

  #51 opened 4 years ago by srcoulombe
  5

• python strawC should report data in a more usable format

  #50 opened 4 years ago by ChenfuShi
  1

• Can you update pip to reflect the current version 0.08 ?

  #49 opened 5 years ago by marianogabitto
  3

• chr_chr map ERROR

  #48 opened 5 years ago by awezmm
  3

• segmentation fault

  #46 opened 5 years ago by dawe
  3

• error when calling straw.straw python api

  #34 opened 5 years ago by gurkanyardimci
  4

• Small test data

  #44 opened 5 years ago by joachimwolff
  1

• Silent failures in straw/straw.py

  #42 opened 5 years ago by srcoulombe
  2

• how is the output from straw formatted?

  #36 opened 5 years ago by hyl317
  7

• straw.py's readMatrix fails silently

  #37 opened 5 years ago by srcoulombe
  0

• Reasonable error messages and exit when no normalization vectors

  #33 opened 5 years ago by nchernia
  0

• EOF met with straw.cpp + aidenlab/Juicebox/blob/master/data/inter.hic

  #32 opened 5 years ago by lindenb
  2