Pinned Repositories
amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
blackmagic
miscellaneous content for NLE projects
epi4you
Some data wrangling for the EPI2ME desktop environment
fastcat
Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
fastq-rs
floundeR
a collection of R-based tools for the exploration and analysis of nanopore sequence data
megrim
nanopoRe
R package including accessory methods for analysis of Nanopore data
sagrudd's Repositories
sagrudd/nanopoRe
R package including accessory methods for analysis of Nanopore data
sagrudd/epi4you
Some data wrangling for the EPI2ME desktop environment
sagrudd/megrim
sagrudd/amos
A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/
sagrudd/blackmagic
miscellaneous content for NLE projects
sagrudd/fastcat
Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.
sagrudd/fastq-rs
sagrudd/floundeR
a collection of R-based tools for the exploration and analysis of nanopore sequence data
sagrudd/gwangmyeongseong3
This a redux of the Sputnik and OpenSputnik comparative genomics projects
sagrudd/packyak
Code for preparing RPMs from requested R packages
sagrudd/pawchop
Like porechop but implemented in rust - not an official project, yet
sagrudd/pipeline-transcriptome-de
Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
sagrudd/rampart
Read Assignment, Mapping, and Phylogenetic Analysis in Real Time
sagrudd/rampart_docker
build content for the https://hub.docker.com/r/ontresearch/artic_rampart containers
sagrudd/rtqc
a toy application for real-time QC of DNA sequence data
sagrudd/sagrudd.github.io
sagrudd/symbioinfo
RPM mischief ...
sagrudd/wf-artic
sagrudd/wf-hap-snps
Small variant calling for haploid samples