Like porechop but implemented in rust - not an official project, yet
The pawchop software is built containing a set of adapters, primers, and sequence information from recent sequencing kits. The software can also accommodate the usage of third party adapter and primer information. This information should be imported from a JSON format file that provides information as per the example below
{
"document_title": "Chemistry Technical Document",
"document_authors": "Oxford Nanopore Technologies",
"source": "https://community.nanoporetech.com/technical_documents/chemistry-technical-document/v/chtd_500_v1_revai_07jul2016",
"date_copied": "Jan 11 2023",
"sequencing_kits": [
{
"kit_name": "Demo Sequencing Kit - dummy information",
"kit_code": "ILLUSTRATION_ONLY",
"barcodes": [
{
"component": "BC01",
"forward_sequence": "AAGAAAGTTGTCGGTGTCTTTGTG",
"reverse_sequence": null
},
{
"component": "BC02",
"forward_sequence": "TCGATTCCGTTTGTAGTCGTCTGT",
"reverse_sequence": null
}
],
"adapters": [
{
"adapter_name": "Ligation Adapter",
"adapter_code": "LA",
"top_strand": "5'-TTTTTTTTCCTGTACTTCGTTCAGTTACGTATTGCT-3'",
"bottom_strand": null
}
]
}
]
}