The aim of this repository is to create a dataset for the SARS-CoV-2 epidemic in Greece.
📣 LAST CASES UPDATE: 29/04/2020
Tests variable on 14/04/2020 deleted due to misleading information in the press releases and reports.
Missing values due to missing report from 12/04/2020 were replaced as follows: Confirmed (Men), Confirmed (Women), Confirmed (>= 65 Years Old), Confirmed (40-64 Years Old), Confirmed (18-39 Years Old), Confirmed (0-17 Years Old) were replaced with the rounded (up) median value of the 11/04/2020 and 13/04/2020. Death Age (>=65 Years Old), Death Age (40-64 Years Old), Death Age (18-39 Years Old), Death Age (0-17 Years Old) were cross references from the news and are the actual values. All the other vales can be obtained from the press release.
r1 -> 12/04/2020 - 3 Death Age (>=65 Years Old) + 2 Death Age (Unidentified)
r2 -> 12/04/2020 - 1 Death Age (>=65 Years Old)
From the above we find out that the 2 Deaths with unidentified age are within the 40-64 Age group.
- Missing values are now reported as blank (Nan) rather than 0.
- Folder with the images added
- Raw folder now contains also the press releases from Εθνικός Οργανισμός Δημόσιας Υγείας - Will be updated further
- Variables are now splitted into two csv files (2 sheets in xlsx). Standard & Secondary. Secondary variables are variables with multiple missing values
- New variables added in Standard and Secondary Variables. Standard Variables now include Death (Women) and Death (Men). Secondary Variables now include Death Age (>=65 Years Old), Death Age (40-64 Years Old), Death Age (18-39 Years Old), Death Age (0-17 Years Old), Travelers, Confirmed Transimission. See the table below for more info.
- Data from now on will also be based in press releases from Εθνικός Οργανισμός Δημόσιας Υγείας
- There are multiple missing values due to missing reports from Εθνικός Οργανισμός Δημόσιας Υγείας. The missing values are reported at the table below.
- There are missing values from the 26/03/2020 to 29/03/2020 due to missing reports from National Organization of Public Health - Εθνικός Οργανισμός Δημόσιας Υγείας. The data from 26/03/2020 to 28/03/2020 are obtained from the press releases published in the website of the Ministry of Health and also saved as pdfs under raw folder.
- The information included in the reports seems to have chanced since 29/03/2020. The reports do not include the following fields Recovered (from hospital), In Hospital, Hospitalized, In Hospital (men), In Hospital (>65).
- In Critical variable since the 1st critical case in Greece 4/03/2020. The values are obtained trough the graphs in the 29/03/2020 report.
- eody_data folder renamed to dataset.
- Several changes in the current README file.
Data included are since the 26/02/2020, 1st confirmed case of SARS-CoV-2 in Greece.
Until 19/03/2020 data are retrieved from Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE
From 20/03/2020 data are obtained by parsing the reports and press releases from the National Organization of Public Health - Εθνικός Οργανισμός Δημόσιας Υγείας
Under dataset folder you can find the raw files (.pdf) from the National Organization of Public Health along with .csv(s) and .xlsx files which contain the following variables as a timeline. The following table shows the availability of each field per date.
| Variable | From | To | Missing Values |
|---|---|---|---|
| Confirmed | 2020-02-26 | 2020-04-29 | 2020-04-19 |
| Critical Condition | 2020-02-26 | 2020-04-29 | 2020-04-19 |
| Deaths | 2020-02-26 | 2020-04-29 | 2020-04-19 |
| Tests | 2020-03-20 | 2020-04-29 | 2020-03-26, 2020-04-14, 2020-04-19 |
| Recovered (from hospital) | 2020-02-26 | 2020-03-27 | 2020-04-19 |
| In Hospital | 2020-03-20 | 2020-03-25 | 2020-04-19 |
| Confirmed (Men) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-03, 2020-04-19 |
| Confirmed (Women) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-03, 2020-04-19 |
| Confirmed (>= 65 Years Old) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-02, 2020-04-19 |
| Confirmed (40-64 Years Old) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-02, 2020-04-19 |
| Confirmed (18-39 Years Old) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-02, 2020-04-19 |
| Confirmed (0-17 Years Old) | 2020-03-20 | 2020-04-29 | 2020-03-26 - 2020-03-28, 2020-03-30 - 2020-04-02, 2020-04-19 |
| Death (Women) | 2020-02-26 | 2020-04-29 | 2020-04-19 |
| Death (Men) | 2020-02-26 | 2020-04-29 | 2020-04-19 |
| Variable | From | To | Missing Values |
|---|---|---|---|
| Citizenship Identified | 2020-03-20 | 2020-03-29 | 2020-03-26 - 2020-03-28, 2020-04-19 |
| Greek Citizenship | 2020-03-20 | 2020-03-29 | 2020-03-26 - 2020-03-28, 2020-04-19 |
| Hospitalized | 2020-03-20 | 2020-03-25 | 2020-04-19 |
| In Hospital (men) | 2020-03-20 | 2020-03-25 | 2020-04-19 |
| In Hospital (>=65) | 2020-03-20 | 2020-03-25 | 2020-04-19 |
| Death Age (>=65 Years Old) | 2020-04-03 | 2020-04-29 | 2020-04-19 |
| Death Age (40-64 Years Old) | 2020-04-03 | 2020-04-29 | 2020-04-19 |
| Death Age (18-39 Years Old) | 2020-04-03 | 2020-04-29 | 2020-04-19 |
| Death Age (0-17 Years Old) | 2020-04-03 | 2020-04-29 | 2020-04-19 |
| Travelers | 2020-04-03 | 2020-04-29 | 2020-04-19 |
| Confirmed Transimission | 2020-04-03 | 2020-04-29 | 2020-04-19 |
Only Confirmed, Deaths, Recovered, Critical Condition, Death (Women) and Death (Men) are available before 20/03/20.
- Explanation of the variables
- Automation on extracting the data from the .pdf files
- Map with the cases
- Contribution guide
- Visualizations
For the thumbnail image: