salanova-elliott
PhD candidate drowning in scripts
The Arctic University of Norway - UiTTromsø, Norway
Pinned Repositories
chelsa_retrieve
Retrieves chelsa data for specified coordinate
jokelvatnet_data
Python notebook to filter and format the metabarcoding data from Jøkelvatnet
jokelvatnet_manuscript
ld-optimized-elim
Given a list of SNPs in linkage disequilibrium, outputs the fewest possible to eliminate so none are in LD
longrep
Solution to Roaslind:LREP
MergeAndFilter
R script for merging and filtering metabarcode data produced by OBITools
n-masker
n-masker for GT-seq
recom-sim
Hybrid simulation tool
taxassign
Assigns taxonomy from BLAST searches and more!
REUSE
Rapid Elimination of Useless Sequences
salanova-elliott's Repositories
salanova-elliott/recom-sim
Hybrid simulation tool
salanova-elliott/jokelvatnet_data
Python notebook to filter and format the metabarcoding data from Jøkelvatnet
salanova-elliott/taxassign
Assigns taxonomy from BLAST searches and more!
salanova-elliott/chelsa_retrieve
Retrieves chelsa data for specified coordinate
salanova-elliott/jokelvatnet_manuscript
salanova-elliott/ld-optimized-elim
Given a list of SNPs in linkage disequilibrium, outputs the fewest possible to eliminate so none are in LD
salanova-elliott/longrep
Solution to Roaslind:LREP
salanova-elliott/MergeAndFilter
R script for merging and filtering metabarcode data produced by OBITools
salanova-elliott/n-masker
n-masker for GT-seq
salanova-elliott/patmat
Solution to Rosalind:TRIE
salanova-elliott/samplesheet_prep
salanova-elliott/splitlocus.py
Splits reads by locus through fuzzy matching to sequence dictionary declared at the beginning of the script
salanova-elliott/tagfile_prep
Prepares a file with tag information for metabarcoding pipeline
salanova-elliott/taqman-genalex-translate
Script to convert TaqMan output to GenAlEx style csv