A brief test to start up?
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Dear SICILIAN development team: @roozbehdn
Thank you for sharing this tool. I am trying to install the tool on our institution HPC cluster, we use LSF scheduler instead. I have been set up the software requirements (python and R packages and umi_tools). Now, I would like to have some helps to make a test:
Download data. I will the approach to down ready-to-user and annotator files. The data are hosted in drive.google.com. I am not able to access. should I have to have a google account?
Is there minimal requested files that can be used as a start up test, probably in the github repository?
Thank you very much.
Rong
Dear ryao-mdanderson, I used gdown for downloading those files.
you can install gdown by pip install gdown
and then gdown https://drive.google.com/uc?id=<file_id>
For example, for Human on this repository you can use gdown https://drive.google.com/uc?id=1cGfn7MZbGewBJp6ZGGW_IOW3nWEAHOPz&export=download
@katze99 Thank you. Your gdown command and example work for me.