Pinned Repositories
adaptive_sampling_scripts
Scripts for adaptive sampling analysis
bacpop-website
Code for group website
bioconda-recipes
Conda recipes for the bioconda channel.
Celebrimbor_analysis
compare_fasta
Contains scripts to analysis recall and precision of gene callers.
ggCaller
Bifrost graph gene caller.
ggCaller_manuscript
Repository of scripts used in ggCaller manuscript.
graph_benchmarking
metagenomics-bioinformatics-mgnify-2024
PopPUNK-mod
Simulates core and accessory genome divergence and calculates Hamming and Jaccard distances.
samhorsfield96's Repositories
samhorsfield96/PopPUNK-mod
Simulates core and accessory genome divergence and calculates Hamming and Jaccard distances.
samhorsfield96/ggCaller
Bifrost graph gene caller.
samhorsfield96/adaptive_sampling_scripts
Scripts for adaptive sampling analysis
samhorsfield96/bacpop-website
Code for group website
samhorsfield96/bioconda-recipes
Conda recipes for the bioconda channel.
samhorsfield96/Celebrimbor_analysis
samhorsfield96/compare_fasta
Contains scripts to analysis recall and precision of gene callers.
samhorsfield96/ggCaller_manuscript
Repository of scripts used in ggCaller manuscript.
samhorsfield96/graph_benchmarking
samhorsfield96/metagenomics-bioinformatics-mgnify-2024
samhorsfield96/PANGWES_mapping
Repo for PANGWES outlier mappings
samhorsfield96/PneumoKITy
PneumoKITy - Fast sensitive Pneumococcal Capsular Serotype screening from WGS data
samhorsfield96/PopPUNK
PopPUNK 👨🎤 (POPulation Partitioning Using Nucleotide Kmers)
samhorsfield96/nanoGPT
The simplest, fastest repository for training/finetuning medium-sized GPTs.
samhorsfield96/pangenome_LLM
samhorsfield96/panGPT
A Generative Pre-Trained Transformer Package for Pangenomes
samhorsfield96/sdsl-lite-feedstock
A conda-smithy repository for sdsl-lite.
samhorsfield96/unitig-caller
Methods to determine sequence element (unitig) presence/absence
samhorsfield96/unitig_coverage
Contains code to enable analysis of unitig coverage in a DBG.