sammyjava

I'm a physicist, web developer, and computational biologist that codes mostly in Java.

National Center for Genome ResourcesUnited States

Pinned Repositories

apollo-elements-in-react
apollo elements experiments in React
Language:HTML0 2 00
ASPB2017
Poster for the 2017 ASPB PlantBio conference
Language:TeX0 2 00
bsharp-pubag
Code to mine data from USDA PubAg
Language:Java00
bsharp-pubmed
Java package for fetching content from PubMed
Language:Java00
covid-R
R routines for reading and plotting COVID-19 related data
Language:R0 2 00
Cowpea
Various analyses related to cowpea
Language:R00
DNAnexus
DNAnexus platform applets
Language:C++0 2 00
neptune
IMS Neptune Java-based Web content management system
Language:HTML1 2 00
pangenomics
Java code writtten for pangenomics work
Language:Java1 3 00
SoyBase
Scripts to suck data out of the SoyBase MySQL database for loading into the mines (and upload to the LIS datastore)
Language:Java11

sammyjava's Repositories

sammyjava/neptune
IMS Neptune Java-based Web content management system
Language:HTML1 2 00
sammyjava/pangenomics
Java code writtten for pangenomics work
Language:Java1 3 00
sammyjava/SoyBase
Scripts to suck data out of the SoyBase MySQL database for loading into the mines (and upload to the LIS datastore)
Language:Java11
sammyjava/apollo-elements-in-react
apollo elements experiments in React
Language:HTML0 2 00
sammyjava/bsharp-pubag
Code to mine data from USDA PubAg
Language:Java00
sammyjava/bsharp-pubmed
Java package for fetching content from PubMed
Language:Java00
sammyjava/covid-R
R routines for reading and plotting COVID-19 related data
Language:R0 2 00
sammyjava/Cowpea
Various analyses related to cowpea
Language:R00
sammyjava/DNAnexus
DNAnexus platform applets
Language:C++0 2 00
sammyjava/GCNG
using graph convolutional neural network and spaital transcriptomics data to infer cell-cell interactions
sammyjava/gsoc
InterMine GSoC informational mini-site for gsoc mentors and students
Language:Ruby
sammyjava/imjs-sorting-test
Test imjs sorting
Language:JavaScript1 0
sammyjava/jaxrs-analyzer-gradle-plugin
Gradle plugin for the https://github.com/sdaschner/jaxrs-analyzer [JAX-RS Analyzer].
Language:Groovy
sammyjava/Maize2018-MGP
MGP poster for the 2018 Maize meeting in France
Language:TeX2 0
sammyjava/Newick-validator
Newick format validator, project for the Bioinformatic course, Università di Milano Bicocca
Language:Python1 0
sammyjava/openai-cookbook
Examples and guides for using the OpenAI API
Language:Jupyter Notebook1
sammyjava/openai-java
OpenAI GPT-3 Api Client in Java
Language:Java
sammyjava/openai-quickstart-node
Node.js example app from the OpenAI API quickstart tutorial
sammyjava/PDcut
Routines for the PDcut project
Language:Shell2 0
sammyjava/PRS-Tutorial
A tutorial on how to run basic polygenic risk score analysis
sammyjava/react-canvasxpress
React canvasXpress demo
Language:JavaScript1 0
sammyjava/react-func-openlayers
A sample application that demonstrates how to integrate OpenLayers with React Functional Components.
sammyjava/react-gene-search
Language:JavaScript
sammyjava/react-leaflet-kml
React leaflet wrapper of leaflet-kml
Language:TypeScript
sammyjava/react-openai-app
React OpenAi Starter Project
sammyjava/react-translator
An example React app that uses a HF model for language translation
Language:JavaScript1 0
sammyjava/snotel
CSV dumps and R routines for loading and overplotting snow depth
Language:R2 0
sammyjava/weka
Handy routines for using the Weka machine learning suite
Language:Java
sammyjava/weka-dev
Experiments with the Weka Java API for machine learning
Language:Java2 0
sammyjava/xgboost
Routines that implement ml.dmlc/xgboost4j
Language:Java