sammyjava

I'm a physicist, web developer, and computational biologist that codes mostly in Java.

National Center for Genome ResourcesUnited States

Pinned Repositories

apollo-elements-in-react
apollo elements experiments in React
Language:HTML0 2 00
ASPB2017
Poster for the 2017 ASPB PlantBio conference
Language:TeX0 2 00
bsharp-pubag
Code to mine data from USDA PubAg
Language:Java0 1 00
bsharp-pubmed
Java package for fetching content from PubMed
Language:Java0 1 00
covid-R
R routines for reading and plotting COVID-19 related data
Language:R0 2 00
Cowpea
Various analyses related to cowpea
Language:R0 2 00
DNAnexus
DNAnexus platform applets
Language:C++0 2 00
neptune
IMS Neptune Java-based Web content management system
Language:HTML1 2 00
pangenomics
Java code writtten for pangenomics work
Language:Java1 3 00
SoyBase
Scripts to suck data out of the SoyBase MySQL database for loading into the mines (and upload to the LIS datastore)
Language:Java1 2 01

sammyjava's Repositories

sammyjava/ASPB2017
Poster for the 2017 ASPB PlantBio conference
Language:TeX0 2 00
sammyjava/legumegraph
Various investigations into client-side graph libraries
Language:JavaScript1
sammyjava/libnewicktree
A standalone Newick tree reader in Java
Language:Java1 0
sammyjava/Maize2018-ig1
Poster for the 2018 Maize meeting in France
Language:TeX
sammyjava/neo4j
Project to develop Neo4j as the backing store for InterMine
Language:Java3 0
sammyjava/PAG-LegFed-2017
A few slides describing the LegFed effort with InterMine for the LegFed side meeting
2 0
sammyjava/pag2017
My poster for the 2017 PAG conference
Language:TeX2 0
sammyjava/pecnv
C++ tools for calling structural variants from PE mapping of short reads.
Language:C++2 0