samsledje

peft_proteomics

LoRA for protein language models

ConPLex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

ConPLex_dev

D-SCRIPT

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

EHRport

Your Data. Your Doctors.

HamSandwichViz

Visualization of the Ham Sandwich Theorem and algorithm for the plane

philharmonic

Pipeline for decoding the functional networks of non-model organisms

samsledje.github.io

Personal website for Sam Sledzieski

TreeFix-TP

Phylogenetic error correction using a transmission-aware cost function

virDTL

samsledje/ConPLex

Adapting protein language models and contrastive learning for highly-accurate drug-target interaction prediction.

samsledje/D-SCRIPT

A structure-aware interpretable deep learning model for sequence-based prediction of protein-protein interactions

samsledje/ConPLex_dev

samsledje/EHRport

Your Data. Your Doctors.

samsledje/HamSandwichViz

Visualization of the Ham Sandwich Theorem and algorithm for the plane

samsledje/philharmonic

Pipeline for decoding the functional networks of non-model organisms

samsledje/samsledje.github.io

Personal website for Sam Sledzieski

samsledje/TreeFix-TP

Phylogenetic error correction using a transmission-aware cost function

samsledje/ablm

Protein language model customized for antibodies

samsledje/AdventOfCode

samsledje/als_regulation_20440

A multi-omics approach to mapping genetic dysregulation in Amyotrophic Lateral Sclerosis (ALS)

samsledje/approximate_ISORANK

Fast and Highly Scalable ISORANK optimization

samsledje/compbio

Python libraries and utilities for computational biology

samsledje/DomainBed

DomainBed is a suite to test domain generalization algorithms

samsledje/evolocity

Evolutionary velocity with protein language models

samsledje/fastDSD

Combining DSD (Cao et al. 2013) runtime optimizations from reemagit

samsledje/Ohno

Code that prints "Oh no" when you run it, and makes you say "Oh no" when you read it

samsledje/Pseudotemporal_GRN_Learning

samsledje/python-package-template

🚀 Your next Python package needs a bleeding-edge project structure.

samsledje/rapppid

Regularised Automatic Prediction of Protein-Protein Interactions using Deep Learning

samsledje/rosalind

Bioinformatics problems from rosalind.info

samsledje/SaML-Lib

A place for me to practice implementation of machine learning algorithms

samsledje/TDC

Therapeutics Data Commons: Machine Learning Datasets and Tasks for Drug Discovery and Development