SamStudio8

Prima donna programmer @nanoporetech. Previously @CLIMB-COVID. I made MonsterDNALab & half of @samtomindustrys. Tat tinkerer, bug hunter, burger flipper.

@nanoporetechBirmingham, UK

Pinned Repositories

mockcommunity
Long-read mock community experiments
Language:HTML103 9 921
chitin
chitin: an awful shell for awful bioinformaticians
Language:Python61 7 392
dehumanizer
rapidly rid reads of horrid humans
Language:Python15 2 61
goldilocks
Locating genetic regions that are "just right"
Language:Python16 3 916
gretel
An algorithm for recovering haplotypes from metagenomes
Language:Python31 3 404
hansel
A graph-inspired data structure for determining likely chains of sequences from breadcrumbs of evidence
Language:Python17 3 74
majora2
Malleable All-seeing Journal Of Research Artifacts
Language:Python36 3 537
naaaavi
Naming avoiding ambiguity automatically assigning valid identifiers
Language:Python32 2 83
reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
Language:Python68 8 545
monsterlab
Monster Lab: teaching the science of sequencing with Lego
Language:C++13 4 233

SamStudio8's Repositories

SamStudio8/reticulatus
A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads
Language:Python68 8 545
SamStudio8/majora2
Malleable All-seeing Journal Of Research Artifacts
Language:Python36 3 537
SamStudio8/dehumanizer
rapidly rid reads of horrid humans
Language:Python15 2 61
SamStudio8/elan-nextflow
for data flowing to birmingham
Language:Python8 2 04
SamStudio8/ocarina2
on-computer agent (for) remembering input actions
Language:Python8 2 121
SamStudio8/ffurf
a very simple python package for defining and filling configurations
Language:Python4 2 2
SamStudio8/elan-ena-nextflow
Language:Nextflow3 2 11
SamStudio8/assert-changelog
Language:Python2 2 0
SamStudio8/dotfiles-2.0
Things I need on my adventures against computers, deployed in a better way than last time
Language:Vim script1 2 0
SamStudio8/adventofcode
Language:Rust1 1
SamStudio8/asklepian
Language:Python2 02
SamStudio8/assert-keepachangelog
1 0
SamStudio8/auger
Language:Python2 0
SamStudio8/climb-covid-outbound-submissions
release scripts for coguk
Language:Shell2 02
SamStudio8/conda
OS-agnostic, system-level binary package manager and ecosystem
Language:Python1 0
SamStudio8/curly-octo-telegram
Language:Nextflow2 0
SamStudio8/django-uncommitted-migrations
Language:Python2 0
SamStudio8/hello-accelerator
Language:Nextflow2 0
SamStudio8/jbrowse-components
Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, and core plugins. To customize behaviors, write an in-house plugin.
Language:TypeScript0 0
SamStudio8/ktkit
kraken toolkit
Language:Python2 42
SamStudio8/lost-notes
2 0
SamStudio8/nextflow
A DSL for data-driven computational pipelines
Language:Groovy0 0
SamStudio8/nf-core-tools
Python package with helper tools for the nf-core community.
Language:Python1 0
SamStudio8/pimoroni-pico
Libraries and examples to support Pimoroni Pico add-ons in C++ and MicroPython.
Language:C1 0
SamStudio8/pms5003-micropython
Language:Python1 0
SamStudio8/pre-commit.com
Language:Python1 0
SamStudio8/singularity
SingularityCE is the Community Edition of Singularity, an open source container platform designed to be simple, fast, and secure.
Language:Go1 0
SamStudio8/Sniffles
Structural variation caller using third generation sequencing
Language:Python0 0
SamStudio8/special-octo-fiesta
2 0
SamStudio8/zana
Language:Python2 0