Pinned Repositories
nf-deseq2
A RNA-seq differential expression analysis pipeline downstream of nf-core/rnaseq.
smartseq2_pipeline
A pipeline for processing single cell RNA-seq data generated with the SmartSeq2 protocol -- Now on nf-core: https://github.com/nf-core/smartseq2
ML_opt_model
Prediction of relapse patient status from Radiomics features
modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
next-preprocesshisto
A pipeline to preprocess H&E slides in input. The slides will go through a thresholding and edge detection to isolate the tissue before being tessellated into small patches for downstream analysis.
nextPyrad
Nextflow pipeline to extract features from imaging dataset using Pyradiomics
scrnaseq
A single-cell RNAseq pipeline for 10X genomics data
sandrocarollo's Repositories
sandrocarollo/nextPyrad
Nextflow pipeline to extract features from imaging dataset using Pyradiomics
sandrocarollo/next-preprocesshisto
A pipeline to preprocess H&E slides in input. The slides will go through a thresholding and edge detection to isolate the tissue before being tessellated into small patches for downstream analysis.
sandrocarollo/ML_opt_model
Prediction of relapse patient status from Radiomics features
sandrocarollo/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
sandrocarollo/scrnaseq
A single-cell RNAseq pipeline for 10X genomics data