Issues
- 0
- 2
The singularity image pulled from docker://sangerpathogens/roary does not accept input gff files
#613 opened by dawnmy - 3
Cant open file: _clustered.clstr
#600 opened by albbaous - 1
Roary using large dataset
#587 opened by MenusGarg - 1
Cloud not obtain clear phylogenic tree
#621 opened by Ronykumawat - 2
i cant install Roary by mamba
#610 opened by leech1225 - 5
Roary not working
#583 opened by KFWins2022 - 0
- 0
- 6
Roary grouping genes that don't meet similarity threshold (using `-i 100`, and `-s`)
#616 opened by LijMeh - 0
Use of uninitialized value in require at /usr/lib/x86_64-linux-gnu/perl5/5.34/Encode.pm line 70.
#618 opened by charlesshirima - 0
Order of genes in alignment
#617 opened by BlabOaklandU - 0
How can I discover the genetic sequences that are used to group groups in roary?
#615 opened by Deblusantos - 1
- 0
cann't install roary 3.13 with mamba/conda
#612 opened by dawnmy - 2
Strange Ouput
#603 opened by ShuyiF - 0
- 0
roary_plots.py heatmap coregenome matrix empty
#609 opened by yjjj2002 - 0
Cant open file: 14L9VpZJtx/DNA16.gff.proteome.faa Please, help with this issue
#608 opened by alanxelena - 0
Missing proteome.faa files
#607 opened by sydelstan - 0
No newick file
#606 opened by Dabiguina94 - 0
how can i solve this issue
#605 opened by ryujinyuna - 0
- 0
number of conserved/unique genes.Rtab
#602 opened by kimTina321 - 0
EXCEPTION: Bio::Root::Exception ------------- MSG: Failed validation of sequence '1'. Invalid characters were: ''''''''''
#601 opened by Psedhai - 8
Use of uninitialized value in require at /usr/lib/x86_64-linux-gnu/perl5/5.34/Encode.pm line 70.
#577 opened by RightCake1 - 1
Use of uninitialized value in require at /Users/.....darwin-thread-multi-2level/Encode.pm line 61
#588 opened by peflanag - 1
kraken
#595 opened by zzzapperant - 0
change the labels of the roary plots
#599 opened by saras224 - 0
GFF3 file by Bakta
#598 opened by ryu1013 - 0
Tutorial problem "'GCA_000008285.1_ASM828v1_genomic.fna' is not a readable non-empty FASTA file"
#597 opened by Turnerathopedotedu - 0
Gene subset from table
#596 opened by canarioviana - 0
MCL clustering
#594 opened by mweberr - 0
Compilation Failed
#593 opened by jhill4796 - 1
- 0
Problem with windows wsl and prokka
#591 opened by Bjiornone - 0
- 1
Get a wrong core_gene_alignment.aln
#584 opened by augustkx - 3
installation seem to be stuck
#585 opened by azat-badretdin - 0
Roary won't install in Conda/Mamba python 3.10 environment, does work in python 3.7
#589 opened by dutchscientist - 0
- 1
Question about the fasta cluster iteratively
#581 opened by bucongfan - 1
- 1
- 2
- 0
- 0
core gene alignment timeout
#576 opened by snogu - 1
- 0
I couldn't find specific predicted coding regions in gene_presence_absence.csv.
#574 opened by huminfo8 - 0
What configuration do I need for the server?
#573 opened by chen202101