sanger-pathogens/iva

Issues

• how to use iva assembly single-end reads

  #109 opened 2 months ago by Deep-Rx
  0

• Failed to make first seed. Cannot continue

  #91 opened 5 years ago by glinchan
  3

• Could not retrieve index file

  #108 opened a year ago by manisenthils
  0

• runtime error

  #107 opened 2 years ago by antoine4ucsd
  0

• IVA run error

  #85 opened 6 years ago by nbbosa
  1

• samtools sort command fails for samtools 1.3.1

  #75 opened 7 years ago by ChrisHIV
  3

• iva --test "Error! File hiv_pcr_primers.fa" not found. Cannot continue.

  #104 opened 3 years ago by k39ajdM2
  3

• iva --version does not give the correct version

  #106 opened 3 years ago by el-mat
  0

• Dead link to sanger virtual machine on main page (https://sanger-pathogens.github.io/iva/)

  #105 opened 3 years ago by eccen
  1

• IVA: kmc error

  #103 opened 4 years ago by waqasuddinkhan
  0

• Different results on repeated runs

  #93 opened 4 years ago by donkirkby
  4

• problem with samtools version

  #101 opened 4 years ago by AntonioBaeza
  0

• Influenza segments missing

  #97 opened 5 years ago by migrau
  0

• chimeric/misassembled contigs generated by IVA?

  #92 opened 5 years ago by nologo68
  0

• test run_gage fails

  #90 opened 6 years ago by rentiandong
  0

• Blank sequence causes TypeError

  #86 opened 6 years ago by donkirkby
  0

• Excessive number of iterations

  #80 opened 7 years ago by buchkovm
  1

• iva version check of external programs fails

  #78 opened 7 years ago by sdwfrost
  3

• Tests fail with KMC 2.3 from Homebrew on OS X

  #63 opened 8 years ago by satta
  4

• kmc std::bad_alloc

  #77 opened 7 years ago by ChrisHIV
  10

• iva test failing with samtools1.4

  #74 opened 7 years ago by rmart300
  1

• IVA sensitivity threshold

  #72 opened 8 years ago by antoine4ucsd
  2

• multithreading smalt error

  #71 opened 8 years ago by lmoncla
  8

• samtools errors caused by mapping.py

  #59 opened 8 years ago by koppk
  4

• Support samtools 1.3

  #57 opened 8 years ago by martinghunt
  0

• IVA: error: unrecognized arguments: path_to_output_directory

  #56 opened 9 years ago by george-githinji
  4

• thread option not passed to kmc

  #54 opened 9 years ago by andreas-wilm
  3

• support an explicit output argument

  #53 opened 9 years ago by george-githinji
  2